Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00861 ATGTTCGGCCCGGCCCAACCCGCTTCCAAGCCTCCCAATTCCACCATCAAACTCCTCTGCAGTTACGGCGGCAGAATCCTCCCTCGCTACCCCGACGGCAAGCTCCGCTACCTCGGCGGCCACACCCGCGTCCTCGCCGTCCACCGCTCCATCCTCTTCTCCGAGCTACTGCTGAAGCTGGAAGAGCTCTGCGGCGCCTCCGTGAGGCACCTTCGCTGCCAATTACCCTCCGAAGACCTCGACGCCTTGGTTTCCATCACCTCCGACGAAGATCTCGCCAACCTCATCGAGGAATACGACCGCGTTTCCTCCGTCAAGATCAGAGCCTTTCTCTCGCCGCCGTCACCGCCGAGATCTCCCACCAAACTTTCCACACCGCCGTCCAAAtcctcttcctcctccgtctcctcctcctcctcctcctcctcgtcctcgtcctcgtcGTATTGCAGCCCTACCGCCGCCGCCGTCTCTGGCCGGACTTACAGAACGTCGGCGCCGTCGGTCGACCGTTGCGTCCACCAGATGTCGCCGGCGCCGGCGTATCCGGTCGTGGTACAGAAATCGAAATCGTCCGGGAGGAATGTTCCTCTGCCGCGCTACGGTTACCATGGGAACAATGGCCACGTTTATCTGATTCACAACGGGAACCACTGGCAATAG 663 0.5611 MFGPAQPASKPPNSTIKLLCSYGGRILPRYPDGKLRYLGGHTRVLAVHRSILFSELLLKLEELCGASVRHLRCQLPSEDLDALVSITSDEDLANLIEEYDRVSSVKIRAFLSPPSPPRSPTKLSTPPSKSSSSSVSSSSSSSSSSSSSYCSPTAAAVSGRTYRTSAPSVDRCVHQMSPAPAYPVVVQKSKSSGRNVPLPRYGYHGNNGHVYLIHNGNHWQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00861 220 MobiDBLite consensus disorder prediction 124 150 - -
Cca06g00861 220 SUPERFAMILY CAD & PB1 domains 32 117 - -
Cca06g00861 220 Pfam PB1 domain 32 112 IPR000270 GO:0005515
Cca06g00861 220 SMART PB1_new 30 114 IPR000270 GO:0005515
Cca06g00861 220 Gene3D - 34 112 - -
Cca06g00861 220 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 9 219 - -
Cca06g00861 220 PANTHER OS05G0427100 PROTEIN-RELATED 9 219 - -
Cca06g00861 220 MobiDBLite consensus disorder prediction 110 150 - -
Cca06g00861 220 CDD PB1_UP2 19 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00861 Cca-Chr6 21789189 21791855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00861 16 163 MAP Kinase Kinase Kinase AT5G57610 39.869 3.41e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00861 - - gmx:100815157 289.656