Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00858 ATGCCTCTTCTGCTCGCACGTGCGCCACCCCCAATCCCTCTAATCTCCCTCTCTCACAACCGCTTCCCACTCGCCGCAACGCCAATTCCTCTCCTCACTCCCGCTTTCGCTTCTCGCCGCATTCTCGCCGCCCCGCCCCCCAACTGCGCCTCCATCAACGGCATCTCCGTTCAGAACAATCCACAAGCTTCCGCCGACCGAGTCCACGCTCCAGACCTTCTCCAGAGGCTTCGCAAATGCCTCCGATTTCTTCCGGAGATTCTCCCCGGCGGTACCTGGTGGGACTTCTCCGACGGCCTCCAGGTTCAGCTGGTGGCGCAGCCCGTCACCGTGTGGCGCGCCCTCGCCAAAATGTGGGACCTTGTCGCGCGTGACAGATGGGTCATTTTCGCTGCTTTCTCTGCTCTCATTGTTGCTGCAGTTTCCGAGATTTCCATACCGCATTTCTTGACGGCGTCCATCTTCTCCGCACAGGGTGCGGACCTTGCTGTTTTTCATCGGAATGTGCGCTTGTTGGTTCTGCTGTGCGTGACTTCCGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCACTTCTTCTGCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGATTTAACAAGTAGGCTTGGGGCGGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACGTTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTGTATGTACATTAGTGATATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGATTGGTCCAAGAAGTCACTGCTTCTGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAAAAGAAGAACATGGAAGGTATAATTGGTGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCGTATGGGATTTGGAATTTTAGCTTTAACACTCTTTATCATTCAACTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGACAATGTATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTTTTCCACTTAATGGATCTCTTACCTAGCAGCCAATTCATAGAAAGAGGGATAAAGTTGCAGATGTTAACAGGGCGTATCGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCGACGGTATCCGTAGTGCAACATGTAAACTTTGTTGTCCATCCAAGCGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTCTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGATAGATGATATCCCTATTAAAGACTTGGACATCAAGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAGCTCTTCCGGATGGATATTAGCTCAAACATCAGATATGGATGTACTCGAGATGTAAAACAGGAGGATATTGAGTGGGCTGCAAAGCAGGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCGAAAATATTGATCCTTGATGAAGCCACTAGTGCGCTAGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTGAGATCTGTTAGAAGTGATTCTGCATCCAGAAGCGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTAGAGATGGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTGTATGCACGGTTAACTAGAAAACAGGCTGATGCCATGGCATGA 2070 0.4614 MPLLLARAPPPIPLISLSHNRFPLAATPIPLLTPAFASRRILAAPPPNCASINGISVQNNPQASADRVHAPDLLQRLRKCLRFLPEILPGGTWWDFSDGLQVQLVAQPVTVWRALAKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQGADLAVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGVCTLVICSILAAVMLRYGRYQKKAARLVQEVTASANDVAQETFSLIRTVRVYGTEKEEHGRYNWWLGKLADISLRQSAAYGIWNFSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVFHLMDLLPSSQFIERGIKLQMLTGRIEFLNVSFHYPSRPTVSVVQHVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPIKDLDIKWWRERIGFVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRSVIVIAHRLSTIQAADRIVVMDGGQIVEMGSHRELLLKDGLYARLTRKQADAMA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00858 689 PANTHER ABC TRANSPORTER B FAMILY 70 688 - -
Cca06g00858 689 Gene3D - 435 688 IPR027417 -
Cca06g00858 689 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 130 411 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00858 689 ProSitePatterns ABC transporters family signature. 583 597 IPR017871 GO:0005524
Cca06g00858 689 SUPERFAMILY ABC transporter transmembrane region 117 427 IPR036640 GO:0005524|GO:0016021
Cca06g00858 689 Gene3D ABC transporter type 1, transmembrane domain 112 430 IPR036640 GO:0005524|GO:0016021
Cca06g00858 689 PIRSF ABC_prm/ATPase_B 59 689 - -
Cca06g00858 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 684 IPR027417 -
Cca06g00858 689 Pfam ABC transporter transmembrane region 131 396 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00858 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 445 683 IPR003439 GO:0005524
Cca06g00858 689 Pfam ABC transporter 464 611 IPR003439 GO:0005524
Cca06g00858 689 CDD ABC_6TM_TAP 132 419 - -
Cca06g00858 689 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 70 688 - -
Cca06g00858 689 SMART AAA_5 472 660 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00858 Cca-Chr6 21757785 21764953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00858 200 687 Calmodulin-binding Proteins AT2G36910 33.803 2.92e-71 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00858 - - gmx:100775951 1158.67