Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00857 ATGACGACGCGATTCAAGAAGAACAGGAAGAAGCGCGGGCACGTGAGCGCCGGCCACGGCCGTATCGGAAAACACCGCAAGCATCCCGGCGGTCGCGGAAACGCCGGCGGCATGCACCACCACCGGATCCTGTTCGACAAGTACCATCCCGGTTACTTCGGGAAGGTGGGTATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCATTGCCCCATCGTCAACATCGACAAGCTCTGGTCGCTGCTGCCACAGGAGGCTAAGGACAAAGCCCTCAAATCCAAGGACGCCGCTCCTTTAATCGACGTGACACAGCACGGTTACTTCAAGGTTCTCGGAAAAGGTGTGCTCCCCCTTAATCAACCCATCGTCGTCAAGGCCAAGCTCGTTTCCAAGATCGCCGAGAAGAAGATTAAGGAAGCCGGTGGCGCTGTTCTTCTCACCGCTTAG 447 0.5705 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSLLPQEAKDKALKSKDAAPLIDVTQHGYFKVLGKGVLPLNQPIVVKAKLVSKIAEKKIKEAGGAVLLTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00857 148 MobiDBLite consensus disorder prediction 1 35 - -
Cca06g00857 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Cca06g00857 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Cca06g00857 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Cca06g00857 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Cca06g00857 148 Gene3D - 58 148 - -
Cca06g00857 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Cca06g00857 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00857 Cca-Chr6 21751173 21752213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00857 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 85.811 8.13e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00857 K02900 - gmx:100817971 288.115