Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00847 ATGATGACAAGTGCAACAACGAATGCACTTAGAAACCTTCCCATGATTGCTAGGGAAAGAAATTTCATGATCACAACACGCACAGTACTCTCGTGTTATTTATTGGCATGTCAATCAATCTTTTATTCTTTAGCTTCAATCAAAACAACCTACTTGGAACCTTTCAAATGCTCCCCTAAGATCACCACATGCATTGCCTCACTCTACCACATAAACTACGGTCTCGACATATACGACATAGCCACCTTCTACTCAGTTAACACCTCCCAAATCAAACCTCTAGCGCGTGGCACCAAGCAAGATTACCTTATAACAATTCCATGTTCTTGCAAAAACACCGACGTTCTTGGCGGATATTTCTATGAAACGACCTACAAGGTGAAGCCTAATGACACGTTTGTGAATATTAACAACGTTACTTATAGTGCCCAAGCCTGGCCTATTAACAAAGGTTTGGACCCAGATGAGGACTTGGCGATACATCTTCCTTGTGGGTGTTCAGAAAAAAGTGATTCTCAAATTGTGGTCACGTATACAGTTCAGCAAAGTGATACAACCTGGTCAATTGCTACTCTGCTAAATGCTACGTTTGATGGCATGAAGAGTATGAATGAAGTTCTGGCTCAGAATCCCTCATTCATAGATATTAATTGGGTGCTGTATGTTCCCAGGGAACTGAATGGTTTACCTTCCAAAGGAAAAGAAAAGAAACACACAATAATCATTGGCGTCTTAGCGGGTGTGTCATTACTTTCAATTATTACCCTGATCATTCTCATTGTCGTTCTTAGGAGATCCAGAGCCAATGCAACAGCCAAAAATGATCAAAGTGCTGTCTCTAAAAGATCAATCGCCAATAGAACTATTTCCTTAATGAACCGAGACTTTCATACAGAAATTGAAGATGCAACACCATTTGAGTCAGAAAGGCCAGTAATTTATACTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACCCGAAGGATTGGAGTAGGTGGATATGGGAGTGTATATTTTGGAATGTTAGAGGGGAAGGAGGTTGCTGTGAAGAAGATGAGGTCCAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCTAGCGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGAACATCTTCATGATCCTTTGCTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGTGTCAAATTGCATTAGATGCAGCAAAAGGTCTTGAATACATACATGATTACACAAAAGCACGATATGTGCACCGTGATATAAAGACCAGTAATATTCTTCTTGATGAGAAGCTTAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAACGATGAAGAATTCATAGCAACGAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACTATCAAAACAGATGTATTTGCATTTGGTGTGGTTCTAGCAGAGTTGATAACAGGGAAACGCGCACTATTTCGTGACAACCAAGAAGCCAACAATATGAAAACACTTGTTAAAGTTGTTGGCCAAATATTCAAGCATGAAGACCCAGAGACTGTGTTAGCAGACACCATAGATGGGAATCTTCAACGTAGCTATCCTATGGAAGATGTGTATAAGATGGCAGAACTAGCTCATTGGTGCTTGCACGAAGATCCAAATGAGAGGCCTGAGATGATGGAGATGCTTGTGGCATTGTCAAAAATTGTGATGTCCTCCATAGAGTGGGAAGCATCACTAGGTGGAGACAGCCAGCAGCAAGCAATGGCGGGGGCAGCCTCTGCTCTGTTCCTCCTCGATATCAAAGGCCGCGTCCTCATCTGGCGCGACTACCGCGGCGACGTCTCCGCCGTCGACGCCGAACGCTTCTTCACCAAACTCATCGAGAAACAGGCCGATCCGCAGTCTCAAGATCCGGTTGTGCACGACAACGGCGTGACCTACATGTTCATTCAGCACAGCAACGTTTACCTCATGATAGCCACAAGACAGAACTGCAATGCCGCGAGCCTTCTCTTCTTCCTGCATCGAATCGTCGACGTGTTTAAGCACTACTTTGAAGAGTTGGAAGAGGAATCGCTTAGAGACAACTTCGTCGTCGTGTATGAGCTACTTGACGAGATTATGGACTTTGGCTACCCTCAGTACACTGAGGCGCAGATTCTTAGTGAGTTCATTAAGACCGATGCTTACAGAATGGAAGTTACGCAGAGACCTCCCATGGCTGTGACTAATGCTGTGTCTTGGCGCAGCGAAGGGATAAACTATAAGAAAAATGAGGTAGTTTTCTTGGATGTGGTGGAGAATGTTAATATACTTGTCAATAGCAATGGACAAATAATTAGATCTGATGTTGTTGGGGCATTGAAGATGAGAACGTATTTGAGTGGTATGCCTGAGTGCAAACTTGGCTTAAATGATAGAGTATTATTAGAGGCGCAAGGTAGAGCAACCAAGGGAAAGGCTATTGACTTGGAAGACATCAAATTTCATCAGTGTGTGCGTTTGGCTCGATTTGAAAATGATCGTACAATTTCCTTTATACCACCTGATGGGTCGTTTGATTTGATGACGTACAGGCTCAGTACACAGGttGTTAAGCCTTTAATTTGGGTGGAAGCAAATGTTGAAAAGCATTCTAAGAGTCGGATTGAGATTATGGTTAAAGCTAGGAGTCAATTTAAGGAACGTAGCACTGCCACAAACGTTGAGATTGAGTTACCTGTGCCTGTTGATGCAACCAATCCTAATGTCCGAACTTCAATGGGAGCTGCATCATATGCACCTGAAAAGGATGCATTAGTCTGGAAAATTAGATCCTTTCCTGGAGGCAAGGAGTATATGTTAAGAGCAGAGTTTCGTCTTCCCAGTATAACAGATGAGGAAGCAACTCCAGAGAGAAAAGCTCCTATACGTGTGAAATTTGAGATACCATATTTTACTGTTTCTGGAATACAGGTAAGATATTTGAAGATTATTGAGAAAAGTGGGTATCAGGCTCTTCCATGGTTGTTTGTTTTGGCAACGGATCGTAAGTTGCTCATTGTCTATAAAGTTCATAACTACAAGTCAGGAATTGTCAAGTGTCAGTGTGTTTTATTATAA 3213 0.423 MMTSATTNALRNLPMIARERNFMITTRTVLSCYLLACQSIFYSLASIKTTYLEPFKCSPKITTCIASLYHINYGLDIYDIATFYSVNTSQIKPLARGTKQDYLITIPCSCKNTDVLGGYFYETTYKVKPNDTFVNINNVTYSAQAWPINKGLDPDEDLAIHLPCGCSEKSDSQIVVTYTVQQSDTTWSIATLLNATFDGMKSMNEVLAQNPSFIDINWVLYVPRELNGLPSKGKEKKHTIIIGVLAGVSLLSIITLIILIVVLRRSRANATAKNDQSAVSKRSIANRTISLMNRDFHTEIEDATPFESERPVIYTLEEIEDATNNFDETRRIGVGGYGSVYFGMLEGKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARCQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLAELITGKRALFRDNQEANNMKTLVKVVGQIFKHEDPETVLADTIDGNLQRSYPMEDVYKMAELAHWCLHEDPNERPEMMEMLVALSKIVMSSIEWEASLGGDSQQQAMAGAASALFLLDIKGRVLIWRDYRGDVSAVDAERFFTKLIEKQADPQSQDPVVHDNGVTYMFIQHSNVYLMIATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAQILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVVFLDVVENVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVVKPLIWVEANVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDATNPNVRTSMGAASYAPEKDALVWKIRSFPGGKEYMLRAEFRLPSITDEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWLFVLATDRKLLIVYKVHNYKSGIVKCQCVLL 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00847 1070 ProSiteProfiles LysM domain profile. 176 222 IPR018392 -
Cca06g00847 1070 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Cca06g00847 1070 Gene3D Mu homology domain, subdomain B 904 1012 - -
Cca06g00847 1070 Pfam Adaptor complexes medium subunit family 783 1040 IPR028565 -
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 727 754 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 639 659 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 786 814 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 971 982 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 931 946 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 PRINTS Clathrin coat assembly protein signature 861 888 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 881 895 IPR018240 GO:0006886|GO:0016192|GO:0030131
Cca06g00847 1070 Pfam Clathrin adaptor complex small chain 631 755 IPR022775 -
Cca06g00847 1070 CDD AP1_Mu_N 630 769 - -
Cca06g00847 1070 PANTHER ASSEMBLY PROTEIN AP47, PUTATIVE-RELATED 625 1042 - -
Cca06g00847 1070 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cca06g00847 1070 SUPERFAMILY SNARE-like 630 765 IPR011012 -
Cca06g00847 1070 CDD AP-1_Mu1_Cterm 780 1039 - -
Cca06g00847 1070 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00847 1070 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 783 1040 IPR036168 -
Cca06g00847 1070 ProSiteProfiles Mu homology domain (MHD) profile. 795 1052 IPR028565 -
Cca06g00847 1070 SMART serkin_6 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00847 1070 Gene3D Mu homology domain, subdomain B 790 1040 - -
Cca06g00847 1070 Gene3D Phosphorylase Kinase; domain 1 305 397 - -
Cca06g00847 1070 Pfam Protein kinase domain 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00847 1070 PANTHER AP COMPLEX SUBUNIT MU 625 1042 - -
Cca06g00847 1070 Gene3D Transferase(Phosphotransferase) domain 1 398 619 - -
Cca06g00847 1070 Gene3D LysM domain 169 228 IPR036779 -
Cca06g00847 1070 Gene3D - 629 769 - -
Cca06g00847 1070 SUPERFAMILY LysM domain 176 223 IPR036779 -
Cca06g00847 1070 Pfam LysM domain 178 223 IPR018392 -
Cca06g00847 1070 SUPERFAMILY Protein kinase-like (PK-like) 309 602 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00847 Cca-Chr6 21646325 21656196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00847 306 621 Receptor kinase-like Gene Family AT1G51940 52.000 5.18e-105 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca06g00847 Pkinase 2.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00847 K12393 - gmx:100800907 978.778