Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00843 ATGAAACATTTTTCTTTCAAGTTACTTGCATTTTGGTCTATGTATCTCCACTTGTCTTCTTCATTTGCATCGGAaaatgagaccgatcatttggcactgctcaagttcaaggagtccatatccaacgacccacatggaatcttgctcacttggaatagttctactcacttttgtaattggcatggaatcacatgcaaccccatgcatcaaagagttatagatttaaacttgctaggatacaagttgaaggggtccatatctccccacttaggcaatctctcttatatgacaagtctcgatctcggaaaaaacaacttctacgggaaaatcccacaagaattaggacgcttgtcacaattggaacaactctatgtcgacaacaactcattggttggagaaattcctacaaacttgacaagttgcactcatctcaaattcTTATACTTAAATGGGAACAATTTGATCGGCAACATACCAATCAAAATTACCTCACTTCGAAGGCTTCAAGGTATGTTTCTTTTTAAGAACCGATTAACAGGAGGGATCCCATCATTCATAGGGAATCTTTCATCCCTAACTGCTCTCTCGGTTGATAGTAACAACTTTGAAGGAGATATTCCGCAAGAAATATGTAATCTCAAAAGGTTGACATTTCTAGCACTAGGTGTCAACAAATTGCGTGGAACACTTCCTTCTTGTTTTTATAATATGTCATCTTTGACTCAATTCTCAGCTCCAGAAAATCAATTAAAGGGCTCTCTTCCACCCAACACTTTTCACATCCTCTCCAATCTCCAACTATTTGAAATTGGTGGCAATCAAATCTCAGGTCCAATCCCATCTTCCATCACAAATGCATCCAACATTTCAACACTTGATATTGGTGCAAACCATTTCACGGGACAAGTTCCAAGCATGGCTATGCTACTAGATCTTCAATATCTAGCTTTGGCTATGAATAATCTAGGTGACAATTCAACCAATGATTTGATGTTTTTAAATTCATTGGCAAATTGTAGTAAGTTGCAACATTTAGATATAGAGAAAAATAATTTTGGAGGTCAATTACCAAAGTCTTTAGGAAATTTATCCACCCAACTTGGTATACTAGCTCTTGGGGGAAATCAAATATTTGGAAACATCCCAGCCGAATTAGGAAATCTAATTAACTTAATTGGCTTAGGCATGGAAAATAACCATTTTGAAGGAATCATCCCATCAACTTTTAGGAAGTTTCAGAAGATGCAAGTGCTAGACTTGAGTGGAAACAAACTTTCGGGAGATATACCAGACTTCATAGGCAACCTTAGTCAATTGTTTTATTTGGATATGGGAAAAAATATGTTAGAAGGTAATATTCCTCCAAATATAGAAAACTGCCAAAAGTTAGATTACTTAAAACTTTCACAAaacaaccttactggaaccatatccttagaggttttcaagttgtcctctctaacaaacttgttggatttgtcacaaaactcattgagtggtagtatcccagaggaagtgggtagtctaatacatatcaatttgctagatgtctctgagaattatctgtctggtgagattcctgaaactattggagaatgcataatgttggagtacctctatttgcaagggaattctttacatggaatcataccatcctctttgggatcacttaaaggtcttcaaggtttagacctctcacgaaacctcttgtctggatcagttcctagtgttctgcagcacattcctttcttacaatatttcaatgtatctttcaacatgttggatggcgaggtaccaactgaaggtgtctttaaaaatgcaagtggattagtggtaactggaaatactaaactttgtggcggtatttttgaactacatctaccaccatgtcccatcaaagagaagaaacttgcaaaacaccacaagttcaggttgatagctggaataactagtgtgcttgtttttcttttcatactgacaattattctaattatctactggatgagaaaaaggagcaagagaccatctttgacttcaccaacgattgaccaattggctaaagtttcatacaaaagccttcacaacggaactgatgggttctcaactacaaacttgatagggtctggaaattttagctctgtctacaaaggaattcttgatttagaagacaaagttgttgccataaaggttctaaaccttgcaagaaaaggagctcacaagagtttcattgccgaatgcaatgcacttaaaaatattagacatcgaaatctagtacaaattttaacatgttgttccggcacagattataaaggtcaagaattcaaagctctaatttttgagtacctgaaaaatggaagcttagaacaatggctacatcctgagacactaactgcaaggcatatgagaacattgaaccttgatcaaagattaaatatcatgattgatgttgcttctgcattacattatcttcataatgaatgtgagcaatcgatcattcattgtgatttaaaaccgagcaatgttcttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttctctcaaccattaaaactactccttctaagcaagcaagtacaatcggaataaaggggacaattggctattctcctccagagtacggattgggttctgaggtgtccacgaatggtgacatgtatagctttgggattcttgtgttggaaatacttaccggaagacgacccacagatgaaatctttgaagatggtcaaaatttgcataactttgtgaaAAATTCATTTCCTGATAATCTATTGCAGATTTTGGACCCATCACTTGTACTAAAACATGAAGAAGCAACAGTAGAAGAAAACAATCAGAATCTTACCCCAACAGTTGAAAAAGGCTTAGTTTCGCTCTTTAAGATTGGACTTGCTTGTTCTGTAGAATCACCAAAAGAAAGAATGAGTATGGTGGATGTCACTAGAGAGCTAAGCAAAATAAGAAAACACTTTCTTGCTGGGGTTCACACTTGA 3036 0.1518 MKHFSFKLLAFWSMYLHLSSSFASENETDHLALLKFKESISNDPHGILLTWNSSTHFCNWHGITCNPMHQRVIDLNLLGYKLKGSISPHLGNLSYMTSLDLGKNNFYGKIPQELGRLSQLEQLYVDNNSLVGEIPTNLTSCTHLKFLYLNGNNLIGNIPIKITSLRRLQGMFLFKNRLTGGIPSFIGNLSSLTALSVDSNNFEGDIPQEICNLKRLTFLALGVNKLRGTLPSCFYNMSSLTQFSAPENQLKGSLPPNTFHILSNLQLFEIGGNQISGPIPSSITNASNISTLDIGANHFTGQVPSMAMLLDLQYLALAMNNLGDNSTNDLMFLNSLANCSKLQHLDIEKNNFGGQLPKSLGNLSTQLGILALGGNQIFGNIPAELGNLINLIGLGMENNHFEGIIPSTFRKFQKMQVLDLSGNKLSGDIPDFIGNLSQLFYLDMGKNMLEGNIPPNIENCQKLDYLKLSQNNLTGTISLEVFKLSSLTNLLDLSQNSLSGSIPEEVGSLIHINLLDVSENYLSGEIPETIGECIMLEYLYLQGNSLHGIIPSSLGSLKGLQGLDLSRNLLSGSVPSVLQHIPFLQYFNVSFNMLDGEVPTEGVFKNASGLVVTGNTKLCGGIFELHLPPCPIKEKKLAKHHKFRLIAGITSVLVFLFILTIILIIYWMRKRSKRPSLTSPTIDQLAKVSYKSLHNGTDGFSTTNLIGSGNFSSVYKGILDLEDKVVAIKVLNLARKGAHKSFIAECNALKNIRHRNLVQILTCCSGTDYKGQEFKALIFEYLKNGSLEQWLHPETLTARHMRTLNLDQRLNIMIDVASALHYLHNECEQSIIHCDLKPSNVLLDDDMVAHVSDFGIARLLSTIKTTPSKQASTIGIKGTIGYSPPEYGLGSEVSTNGDMYSFGILVLEILTGRRPTDEIFEDGQNLHNFVKNSFPDNLLQILDPSLVLKHEEATVEENNQNLTPTVEKGLVSLFKIGLACSVESPKERMSMVDVTRELSKIRKHFLAGVHT 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00843 1011 ProSitePatterns Protein kinases ATP-binding region signature. 706 736 IPR017441 GO:0005524
Cca06g00843 1011 Pfam Protein kinase domain 702 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00843 1011 SUPERFAMILY L domain-like 26 322 - -
Cca06g00843 1011 SUPERFAMILY L domain-like 365 620 - -
Cca06g00843 1011 SMART serkin_6 700 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00843 1011 PANTHER LRR RECEPTOR-LIKE KINASE 18 1006 - -
Cca06g00843 1011 PANTHER OS04G0122200 PROTEIN 18 1006 - -
Cca06g00843 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Cca06g00843 1011 SMART LRR_typ_2 412 436 IPR003591 -
Cca06g00843 1011 SMART LRR_typ_2 557 580 IPR003591 -
Cca06g00843 1011 SMART LRR_typ_2 117 141 IPR003591 -
Cca06g00843 1011 SMART LRR_typ_2 388 411 IPR003591 -
Cca06g00843 1011 SMART LRR_typ_2 484 509 IPR003591 -
Cca06g00843 1011 SMART LRR_typ_2 189 213 IPR003591 -
Cca06g00843 1011 Gene3D Phosphorylase Kinase; domain 1 681 781 - -
Cca06g00843 1011 Gene3D Ribonuclease Inhibitor 25 311 IPR032675 -
Cca06g00843 1011 Gene3D Transferase(Phosphotransferase) domain 1 782 1007 - -
Cca06g00843 1011 ProSiteProfiles Protein kinase domain profile. 700 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00843 1011 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515
Cca06g00843 1011 SUPERFAMILY Protein kinase-like (PK-like) 674 998 IPR011009 -
Cca06g00843 1011 Pfam Leucine rich repeat 394 449 IPR001611 GO:0005515
Cca06g00843 1011 Pfam Leucine rich repeat 536 594 IPR001611 GO:0005515
Cca06g00843 1011 Gene3D Ribonuclease Inhibitor 324 631 IPR032675 -
Cca06g00843 1011 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00843 Cca-Chr6 21558430 21562098 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00843 26 1011 Receptor kinase-like Gene Family AT3G47570 44.645 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca06g00843 Pkinase 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00843 - - gmx:100801459 1482.23