Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00841 ATGTCTCTTGCATCATTTTTTCTTGTCTTCCTTTGTTGTCATGCACTTCCTTCTCTTGCTGATCCAAGAGAGACAGAGGCAGCTGTGTTGTGCACCAACACCACAGCACCAACGCCTCTGAGACAAGCTTTCTTAGAAAACTTTTATGATGCTTTGGATGCCTTAACCAGTGAGGTCACAAGGCAAAGATATGCACTTATAGTTAGAGGATCTACTCAAAGTAATGCCACTGTCTATGCCTTTGGTGAGTGCATGAAAGATCTTTCTATTCCAGATTGTGGTGTCTGCTTTGCTCAGTGCAAGACAAGTGTCCTTAAGTGCTTTCCAATTCAGAGAGGGGTTAATGGTGGCAGGCTCTTCTTTGATGGGTGCTATCTTAGGTATGATGGCTACAACTTCTTCAATGAGAGTGTGAGTCCTAAGGACATGACTGTTTGTGGAAATGAAGATTTTAGAGGGAATTGGAGTGTTTACAAGGCCAATACTTTGGAGTTGGTGAGAAATTTGAGCGTTGAAGCACCAAAGAATGAAGGGTTCTTTGTGGGGTATGTGAGTAGAAGGAATGTGACTGTTTATGGGTTGGCTCAATGCTGGAAGTATGTCAATGCCACTGCTTGTCAGAATTGTTTGGCTAAAGCTGCCACTAGGATTGATTCTTGTGCTTCAAAAGGAGAAGGAAAGGCATTGAATGCAGGGTGCTACTTGAGGTATTCCACACGCAATTTCTATATTAGTTCAAGCCACAATAACCCTCAAGAAAAAAAAGGAAATAAAAATCTTGCTATAATTGTGGCTGCATCATCTGCTTCCGTGGCTCTTCTGCTGATTGTTACAACTGTGATTTTCTTTGTAAGGAAAAATGTACTGAAGCGGAGGAGAGAAAGAAGACAATTTGGTGTACTTTTGGAATCGGTGAACAAGTCCAAACTAAATATGCCATATGAAATTCTTGAGAAAGCCACTGATTACTTCAGTGATTCCAATAAGCTAGGAGAAGGGGGATCAGGATCAGTTTATAAAGGAGCTCTGCCAGATGGTACTACCGTGGCTATAAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATCAGTCGCATTCATCACAAAAATCTAGTGAAGCTTTTAGGATGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATTTGTGCCTAATCATAGCCTCTATGATCACCTATCTGGTAGAATGAATACTCAACAATTAACATGGGAAATCAGGCATAAAATCATATTGGGAACGGCAGAGGGCTTGGCCTATCTTCATGAGGAATCACAGAGAATCATTCATAGAGATATAAAATTAGGCAACATTCTCATTGATGACAACTTCACACCTAAGATTGCTGATTTTGGACTAGCTAGATTATTTCCAGAAGACAAGTCTCATCTTAGCACAGCCATTTGTGGCACACTGGGTTATATGGCTCCAGAATATGTAGTTCTAGGAAAGTTAACTGAGAAAGCAGATGTCTACAGTTTTGGCGTTCTAATTATGGAAATTATATCTGGCAAAAAGAGCACATCCTTCGTTCAAACTTCATATTCCATTCTACACACGGTTTGGAGCCTTTATGGATCAAACAGGTTATGTGACATTGTTGATCCAATCTTAGAGGGAAATTATCCGGTAGAGGAAGCATGCAAACTCCTTAAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGCTTAGACCACCCATACATGGGTGGTTGTTGCCACGTGTGGGGCCTGTTTCTATGGCTAATAAATGGGTTTCTTGTCAGTGGCCTACCAGAGAAAGTTATTTGGATCAGATAATCCCAAAAATGAAGAAACCAGTCTCTCTCATATGTTCGCAATGCACCGTTCTTCTTCTCATCAAGTTCCTGTTGCTATCAGAGATTGCAATGGCAGAACCAAGGGCCAAGACAGTCCTAATAACATGTGGCCATGAACTAGAGCACAACACTACTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGAAGATCAGTGATGAGATGCGCAAAACTGGCTTTGGCACAGCAGTTGTAGGGACAGGACCTGATACTAACTATGGCCTGGCCCAGTGTTATGGAGATCTTTCATTACTTGACTGTGTATTATGCTATGCTGAGGCACGCACGGTTCTTCCTCAGTGCTTCCCTTATAATTCTGGTCGCATTTTCCTTGATGGTTGCTTCATGAGGGCTGAGAATTATAGTTTCTTTGATGAGTATAAGGGACCAGGAGACAGAGCTGTATGTGGGAACACAACCAAGAAGAATTCAAGTTTTCAAGCAGCAGCAAAGCAGGCAGTTTTGAAAGCAGTTCAAGAAGCACCCAACAACAAAGGATATGCCAGAGGGAATGTTGCTGTAGCAGGAACAACTAACCAATCTGTTTATGTTCTGGCTGATTGTTGGAGGACTCTGGACCAAAGTTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCCATATTGGGATGTTTTCCCTGGTCAGAAGGGAGAGCGCTCAACACCGGCTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAGCAGGAAAATGGGAGTTCAAGAGGTAATGTGGTAGTGATAGTGGTTGCGGTTGTCAGTTCGGTGATTGTTTCGGTGGTTGGAGTAACTATTGGAGTTTATATGTGGAAACAAAGATACATTCAAAAGAAACGGAGAGGATCAAATGATTCAGAAAAGCTAGCAAAAACACTTCAGAACAAGAGCTTGAACTTCAAGTACTCTACATTGGAAAAGGCAACAGAATCTTTTCATGAAAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGACGGGAGAGAGATTGCTATCAAGAGGTTATATTTCAATAACAGACATAGAGCAGCAAATTTCTACAACGAAGTCAACATAATTAGTAGCGTGGAACATAAGAATCTAGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTATATGAATTTCTACCCAACAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAAAGAATTGAACTGGGAAAAGAGATATGAAATTATCATTGGGACAGTCGAAGGATTAGTTTACCTGCATGAGAACTCCAAAACAAGGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGTTTCGTGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAGGACGAGAGCCACATTAGTACAGCTATTGCAGGAACATTGGGGTATATGGCTCCCGAGTACTTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTATACAGTTTTGGGGTGTTGCTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAAGCATTAGAGTATTCAGACAGCTTAGTTACAGTGGCATGGAAGCATTTCCAGGCAGGAACTGCTGAACAATTATTTGATCCAAATCTAGAGTGGCAGGACGAGCACAAAAGCAATATTAAGGATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTTCATTACGACCAATCATGTCAAAGACACTACAGATGCTAACAAAGAAGGAGGAGCATCTTGTTGCTCCCTCTAATCCACCCTTCCTAGATGAGTTTACTATGGAACTTCACGACACAAGTGGTGACCCATTTTATCCCCTTAATGCAGCAGCTGATTCAATTGCTACTATGTCCCATAGCTCTTTTTATCCCAGGTGA 3813 0.4141 MSLASFFLVFLCCHALPSLADPRETEAAVLCTNTTAPTPLRQAFLENFYDALDALTSEVTRQRYALIVRGSTQSNATVYAFGECMKDLSIPDCGVCFAQCKTSVLKCFPIQRGVNGGRLFFDGCYLRYDGYNFFNESVSPKDMTVCGNEDFRGNWSVYKANTLELVRNLSVEAPKNEGFFVGYVSRRNVTVYGLAQCWKYVNATACQNCLAKAATRIDSCASKGEGKALNAGCYLRYSTRNFYISSSHNNPQEKKGNKNLAIIVAASSASVALLLIVTTVIFFVRKNVLKRRRERRQFGVLLESVNKSKLNMPYEILEKATDYFSDSNKLGEGGSGSVYKGALPDGTTVAIKRLSFNTTQWADHFFNEVNLISRIHHKNLVKLLGCSITGPESLLVYEFVPNHSLYDHLSGRMNTQQLTWEIRHKIILGTAEGLAYLHEESQRIIHRDIKLGNILIDDNFTPKIADFGLARLFPEDKSHLSTAICGTLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKKSTSFVQTSYSILHTVWSLYGSNRLCDIVDPILEGNYPVEEACKLLKIGLLCAQASAELRPPIHGWLLPRVGPVSMANKWVSCQWPTRESYLDQIIPKMKKPVSLICSQCTVLLLIKFLLLSEIAMAEPRAKTVLITCGHELEHNTTIFVPNFVATMEKISDEMRKTGFGTAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIFLDGCFMRAENYSFFDEYKGPGDRAVCGNTTKKNSSFQAAAKQAVLKAVQEAPNNKGYARGNVAVAGTTNQSVYVLADCWRTLDQSSCKACLENASSSILGCFPWSEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVVIVVAVVSSVIVSVVGVTIGVYMWKQRYIQKKRRGSNDSEKLAKTLQNKSLNFKYSTLEKATESFHENNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAANFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGKELNWEKRYEIIIGTVEGLVYLHENSKTRIIHRDIKASNILLDAKFRAKIADFGLARSFQEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKALEYSDSLVTVAWKHFQAGTAEQLFDPNLEWQDEHKSNIKDEILRVVHIGLLCTQEVPSLRPIMSKTLQMLTKKEEHLVAPSNPPFLDEFTMELHDTSGDPFYPLNAAADSIATMSHSSFYPR 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00841 1270 SUPERFAMILY Protein kinase-like (PK-like) 310 588 IPR011009 -
Cca06g00841 1270 Pfam Protein kinase domain 943 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00841 1270 Pfam Protein kinase domain 325 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00841 1270 ProSiteProfiles Gnk2-homologous domain profile. 25 133 IPR002902 -
Cca06g00841 1270 ProSiteProfiles Protein kinase domain profile. 943 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00841 1270 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 584 - -
Cca06g00841 1270 ProSiteProfiles Protein kinase domain profile. 324 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00841 1270 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Cca06g00841 1270 Gene3D Phosphorylase Kinase; domain 1 903 1018 - -
Cca06g00841 1270 ProSiteProfiles Gnk2-homologous domain profile. 652 753 IPR002902 -
Cca06g00841 1270 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Cca06g00841 1270 ProSiteProfiles Gnk2-homologous domain profile. 758 863 IPR002902 -
Cca06g00841 1270 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 627 1250 - -
Cca06g00841 1270 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 6 584 - -
Cca06g00841 1270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Cca06g00841 1270 Gene3D - 142 242 IPR038408 -
Cca06g00841 1270 Gene3D - 653 753 IPR038408 -
Cca06g00841 1270 Gene3D - 25 133 IPR038408 -
Cca06g00841 1270 Gene3D - 763 863 IPR038408 -
Cca06g00841 1270 CDD STKc_IRAK 949 1220 - -
Cca06g00841 1270 ProSiteProfiles Gnk2-homologous domain profile. 139 242 IPR002902 -
Cca06g00841 1270 SUPERFAMILY Protein kinase-like (PK-like) 928 1241 IPR011009 -
Cca06g00841 1270 Pfam Salt stress response/antifungal 150 239 IPR002902 -
Cca06g00841 1270 Pfam Salt stress response/antifungal 670 751 IPR002902 -
Cca06g00841 1270 Pfam Salt stress response/antifungal 766 860 IPR002902 -
Cca06g00841 1270 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Cca06g00841 1270 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 627 1250 - -
Cca06g00841 1270 ProSitePatterns Protein kinases ATP-binding region signature. 949 971 IPR017441 GO:0005524
Cca06g00841 1270 Gene3D Transferase(Phosphotransferase) domain 1 400 589 - -
Cca06g00841 1270 Gene3D Transferase(Phosphotransferase) domain 1 1019 1229 - -
Cca06g00841 1270 CDD STKc_IRAK 330 585 - -
Cca06g00841 1270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1064 1076 IPR008271 GO:0004672|GO:0006468
Cca06g00841 1270 SMART serkin_6 943 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00841 1270 SMART serkin_6 324 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00841 Cca-Chr6 21531220 21542250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00841 7 621 Receptor kinase-like Gene Family AT1G70520 38.291 6.60e-129 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca06g00841 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00841 - - gmx:100804094 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00841 06 21531220 21542250 Cca06g00841 06 21531220 21542250 ECH
Cca06g00841 06 21531220 21542250 Cca11g00698 11 11852905 11857796 PCT