Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00839 ATGGATGAAATGTACGGAGTGCCGTCGACGGCGGAGTACGCCGACAAGGCTCTCATGACGCCGGAGAATCTGATTTTCCCCGCCGACTACCACGGCTACCTCGCCGCAGCCCGGATTCCGATGTTCGGATCCGACGAGCTCTTCTCCGCCGAGCCCTCCGCCGGAATTCAGCGCCCGCACGAGGAGGACGTGGCCAGCGCCGTCATGAAGGCCAAAATCGCCTCGCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGCTTGTTGGACGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACTTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTGGTCAAGTATAAATCCGACTTGGCTCGCCCTTTCGACGAGGCAACCACCTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACCGGCGCTTCCGTTTCCACTCTTTCTGACGATGGGGGTGTGTCCTCGGAAGAAGATTTGAGTACCGGAGATGGTGATGCTCAAGATGGGCAAGTAAAGGGTGAAGATCGTGAGCTGAAGGATAAGCTTTTACGTAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGTTCTCAAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAATATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAGGTCAACAGGACTAGATCAGAAGCAAATTAATAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCTATGATGGAAAATCTTAACGGACGGTTCCTTGCCGATGAATGA 927 0.5156 MDEMYGVPSTAEYADKALMTPENLIFPADYHGYLAAARIPMFGSDELFSAEPSAGIQRPHEEDVASAVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLDEIRRENDLCKSDFVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTLSDDGGVSSEEDLSTGDGDAQDGQVKGEDRELKDKLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQILLQWWNVHYKWPYPTEADKIELARSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00839 308 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677
Cca06g00839 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 306 - -
Cca06g00839 308 Gene3D - 224 298 - -
Cca06g00839 308 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 60 306 - -
Cca06g00839 308 SUPERFAMILY Homeodomain-like 226 297 IPR009057 -
Cca06g00839 308 CDD homeodomain 237 289 IPR001356 GO:0003677
Cca06g00839 308 SMART KNOX2_2 117 168 IPR005541 GO:0003677|GO:0005634
Cca06g00839 308 SMART HOX_1 227 292 IPR001356 GO:0003677
Cca06g00839 308 Pfam ELK domain 205 226 IPR005539 GO:0003677
Cca06g00839 308 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981|GO:0006355
Cca06g00839 308 MobiDBLite consensus disorder prediction 176 203 - -
Cca06g00839 308 Pfam KNOX2 domain 121 167 IPR005541 GO:0003677|GO:0005634
Cca06g00839 308 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Cca06g00839 308 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677|GO:0006355
Cca06g00839 308 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Cca06g00839 308 SMART ELK_2 205 226 IPR005539 GO:0003677
Cca06g00839 308 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00839 Cca-Chr6 21514651 21523200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00839 1 308 Homeobox Transcription Factor Family AT1G23380 64.742 7.06e-142 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca06g00839 KNOX2 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00839 - - gmx:100785764 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00839 06 21514651 21523200 Cca06g00839 06 21514651 21523200 ECH
Cca06g00839 06 21514651 21523200 Cca11g00697 11 11843392 11851329 PCT