Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00836 ATGGAACTTAGTAGTGTGGTTTTCTGGTTACTGGGGTTGTTTCTTCTGCTGTTGATGGAAATTTCTTCTGCTGCTCTTTCTCCTTCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGAATGACTTGATTGATCCTCACAATGTCTTGGAAAATTGGGATATTAATTCTGTTGATCCATGTAGCTGGAGGATGATTACCTGTTCCTCAGATGGCTATGTTTCTGCATTGGGGTTGCCTAGTCAGAACTTGTCTGGTACACTATCTCCTGGGATTGGAAACCTTACTAACTTACAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGGTTCCTGCTGCAATAGGAAGCTTGGAAAAGCTTCAGACACTTGATCTTTCCAATAATACATTTAATGGTGAGATACCAAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGCGGTTAAATAATAACAGCCTTACAGGATCGTGCCCTCAGTCTCTTAGCAACATTGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCAAGGATATCGGCAAGAACATTAAAGTTTGGGGGTAACCCATTAATTTGTGGCCCAAAAGCAAACTGTTCTACTGTTTTACCAGAGCCACTTTCATTCCCTCCAGATGCTCTAAGAGGCCAATCAGACTCTGGTAAAAAAAGCCATCATGTAGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTTATTGTGATTGTAGTTGGGTTTCTTGTTTGGTGGCGGTATAGACGCAACCAGCAGATATTCTTTGATGTCAATGAGCATTACGATCCAGAGGTGCGCCTTGGTCATTTGAAAAGGTTTTCATTTAAAGAGCTTCGAGCTGCAACAGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGCTTCGGAATAGTTTACAAGGCAAGCTTGAATGATGGGTCTGTTGTGGCTGTTAAAAGGTTAAAGGACTATAATGCAGCTGGTGGTGAGATCCAATTTCAGACAGAAGTTGAGACAATAAGTTTGGCTGTTCACCGGAATCTTCTGAGGCTTTCGGGGTTTTGCAGCACTCAGCATGAAAGACTCCTTGTTTATCCATATATGCCTAATGGCAGTGTAGCCTCTAGATTAAAAGACCATATTCATGGCCGGCCAGCATTAGATTGGACAAGGAGGAAGAGAATAGCTTTAGGCACAGCAAGAGGGTTGGTTTACTTGCATGAGCAATGTGACCCTAAAATTATTCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCCAAGCTTTTGGATCATAGAGATTCCCATGTGACCACAGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAATCATCGGAAAAGACTGATGTGTTTGGGTTTGGCATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGAGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGATAAGGATCTAAAGGGCAACTTTGATATGATTGAATTAGAAGAAATGGTTCAGGTAGCACTCTTGTGTACACAATTCAACCCTTCACACCGCCCCAAGATGTCAGAAGTATTGAAGATGTTGGAAGGGGATGGCTTAGCTGAAAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTGATAGAGGAATCTTCACTCATAGTTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1869 0.4307 MELSSVVFWLLGLFLLLLMEISSAALSPSGINYEVVALMAIKNDLIDPHNVLENWDINSVDPCSWRMITCSSDGYVSALGLPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRVPAAIGSLEKLQTLDLSNNTFNGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKFGGNPLICGPKANCSTVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIVVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRAATDHFNSKNILGRGGFGIVYKASLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMPNGSVASRLKDHIHGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDMIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIVEAMELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00836 622 ProSiteProfiles Protein kinase domain profile. 301 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00836 622 SUPERFAMILY L domain-like 32 202 - -
Cca06g00836 622 Gene3D Transferase(Phosphotransferase) domain 1 378 593 - -
Cca06g00836 622 SMART serkin_6 301 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00836 622 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00836 622 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Cca06g00836 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Cca06g00836 622 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Cca06g00836 622 SUPERFAMILY Protein kinase-like (PK-like) 277 575 IPR011009 -
Cca06g00836 622 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cca06g00836 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 622 - -
Cca06g00836 622 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Cca06g00836 622 PANTHER PROTEIN NSP-INTERACTING KINASE 3 5 622 - -
Cca06g00836 622 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00836 Cca-Chr6 21449682 21456102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00836 67 622 Receptor kinase-like Gene Family AT1G60800 77.368 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca06g00836 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00836 - - gmx:100784164 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00836 06 21449682 21456102 Cca06g00836 06 21449682 21456102 ECH