Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00829 ATGCagatcttcgtgaaaaccctaacgggtaaaacgataaccttggaggtggagtcttcggacaccatcgacaacgtcaaggccaagatccaggacaaggagggcattccgccggaccagcagcgcctcatcttcgccggaaagcagctcgaggacggccgcaccctcgccgactacaacatccagaaggagtccactctccaCCTCGTCCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCATAAGAAGGTTAAGCTCGCTATTCTTCAGTTCTACAAGGTCGACGACTCTGGCAAGGTCCAGAGGCTCAGGAAGGAGTGCCCCAATGCCGAGTGCGGCGCCGGGACTTTCATGGCCAACCACTTCGACCGCCACTACTGCGGCAAGTGCGGTTTGACCTATGTCTACCAGAAGGCTGGGTTTCGGAAGCTGTGGGTTTTCGGATGTTGA 492 0.3374 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAILQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGFRKLWVFGC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00829 163 PANTHER UBIQUITIN 1 146 - -
Cca06g00829 163 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Cca06g00829 163 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Cca06g00829 163 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Cca06g00829 163 SMART ubq_7 1 72 IPR000626 GO:0005515
Cca06g00829 163 Gene3D - 81 154 IPR038582 -
Cca06g00829 163 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Cca06g00829 163 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Cca06g00829 163 CDD Ubl_ubiquitin 1 76 - -
Cca06g00829 163 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Cca06g00829 163 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cca06g00829 163 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cca06g00829 163 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cca06g00829 163 Gene3D - 1 80 - -
Cca06g00829 163 SUPERFAMILY Zn-binding ribosomal proteins 100 153 IPR011332 GO:0006412
Cca06g00829 163 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00829 Cca-Chr6 21328552 21329321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00829 1 153 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 92.157 3.42e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00829 K02977 - qsu:111999144 280.411