Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00828 ATGGTGAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCCTTTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCAAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCCTGATGACATATTCTGATTGTGAGGAAGAGGATGTAATTCCAATTAGTAATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTTATCAAAGAAGAGATTAAGAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTACAAAGGAGATGAAGAGAGCTCTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGTTGGGGTCAATGAAGATGAAGGTCAAGGTTTCCGTGGAATAAAGGTTCCAAGGAACTCCATCTTGGAAAGGACACCGTTTGAGTGA 573 0.438 MVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSQEEDANKTLNSHSASLMTYSDCEEEDVIPISNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQYKGDEESSSQTDQLVDLDSQVDPPDVGVNEDEGQGFRGIKVPRNSILERTPFE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00828 190 Pfam YABBY protein 1 138 IPR006780 GO:0007275
Cca06g00828 190 MobiDBLite consensus disorder prediction 133 190 - -
Cca06g00828 190 MobiDBLite consensus disorder prediction 138 154 - -
Cca06g00828 190 PANTHER PROTEIN YABBY 6-RELATED 1 154 IPR006780 GO:0007275
Cca06g00828 190 PANTHER AXIAL REGULATOR YABBY 4 1 154 - -
Cca06g00828 190 SUPERFAMILY HMG-box 83 137 IPR036910 -
Cca06g00828 190 Gene3D High mobility group box domain 82 148 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00828 Cca-Chr6 21317650 21320562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00828 1 190 C2C2-YABBY Transcription Factor Family AT1G23420 55.122 2.76e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca06g00828 YABBY 7.8e-52 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00828 K25796 - gmx:100806755 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00828 06 21317650 21320562 Cca06g00828 06 21317650 21320562 ECH
Cca06g00828 06 21317650 21320562 Cca11g00691 11 11593838 11597581 PCT