Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00825 ATGAGGCCGATTTTGATGAAAGGCCACGAGAGGCCACTCACTTTCCTCAAATACAACAGGGACGGTGATCTACTATTCTCCTGCGCCAAGGACCACAACCCTACCGTGTGGTTCGCCGACAACGGCGAACGCTTGGGCACTTACCGAGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAAGGATTCGAGTAGACTTATAACGGGGAGTGCGGATCAGACCGCCAAGCTGTGGAACGTGCAAACTGGTCAGCAGTTGTTTACCTTCAATTTTGATTCTCCGGCGAGGTCGGTGGATTTCGCCGTCGGCGATAAGCTCGCCGTTATGACCACTGATCCGTTTATGGAATTGCCCTCTGCAATACATGTCAAACGCATTGCCAGAGATCCCGCTGATCAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGGAGAATTAATAGAGCTATTTGGGGACCCCTGAACAGAACCATTATCAGTGCTGGAGAAGATGCTGTTATCCGGGTTTGGGATTCTGAGACAGGGAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACTGTAACATCACTTGCAAAGTCTGCGGATGGTTCCCATTTCCTAACTGGCTCCCTTGATAAGTCTGCTAGGCTTTGGGATACTAGAACATTGACTCTGATCAAGACGTATGTCACAGAACGCCCAGTCAATGCAGTTGCAATGTCACCTCTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACAACTACTGACCATCGTGCTGGCAAATTTGAAGCCAAATTTTATGATAAGATTCTTCAAGAAGAAATTGGGGGTGTAAAAGGACATTTTGGACCAATTAATGCATTGGCTTTTAACCCTGATGGGAAGAGCTTTTCAAGCGGAGGCGAAGATGGTTATGTACGTCTATTCTGGTTGACGCTTCTCACTCCCATCTCGCGTTGCTGCAAAGCGATACCATCTTTCGTTCATCTCTCTCTCCAAAGGGATCCGCAGGCTGAAGGAGAAATGGGGCTGACGTTCACGAAGCTTTTCAGTCGGCTTTTCGCGAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCCTCTACAAGCTCAAGCTTGGAGAGATCGTTACCACAATTCCTACCATTGggttcaatgttgagactgtggagtacaagaacattagcttcactgtttgggatgtcggtggccaggacaagattcgtcctttgtggaggcactacttccagaacactcagggtcttatttttgttgtagatagcaatgatagggacagagttgttgaggccagagatgagttacataggatgttgaatgagGATGAACTGAGAGATGCAGTATTGCTTGTGTTTGCCAATAAGCAAGATCTTCCTAATGCAATGAATGCGGCTGAGATTACTGATAAGTTGGGTCTCCACTCTCTCAGACAGCGCCACTGgtacattcagagcacctgtgcaacctccggagaaggcctttatgaaggtttggactggctttccaacaacattgccaataagGCTTAA 1587 0.3982 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSKDSSRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVMTTDPFMELPSAIHVKRIARDPADQTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRVWDSETGKLLKESDKESGHKKTVTSLAKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLFWLTLLTPISRCCKAIPSFVHLSLQRDPQAEGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00825 528 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Cca06g00825 528 Pfam WD domain, G-beta repeat 283 315 IPR001680 GO:0005515
Cca06g00825 528 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cca06g00825 528 PRINTS GTP-binding SAR1 protein signature 421 446 IPR006689 GO:0003924|GO:0005525
Cca06g00825 528 PRINTS GTP-binding SAR1 protein signature 394 418 IPR006689 GO:0003924|GO:0005525
Cca06g00825 528 PRINTS GTP-binding SAR1 protein signature 466 487 IPR006689 GO:0003924|GO:0005525
Cca06g00825 528 PRINTS GTP-binding SAR1 protein signature 366 389 IPR006689 GO:0003924|GO:0005525
Cca06g00825 528 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cca06g00825 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 315 - -
Cca06g00825 528 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 323 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cca06g00825 528 ProSiteProfiles small GTPase Arf family profile. 358 524 - -
Cca06g00825 528 TIGRFAM small_GTP: small GTP-binding protein domain 363 497 IPR005225 GO:0005525
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cca06g00825 528 Pfam ADP-ribosylation factor family 352 524 IPR006689 GO:0003924|GO:0005525
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Cca06g00825 528 SMART rab_sub_5 365 527 - -
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 315 IPR001680 GO:0005515
Cca06g00825 528 Gene3D - 1 321 IPR015943 GO:0005515
Cca06g00825 528 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cca06g00825 528 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cca06g00825 528 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cca06g00825 528 CDD WD40 7 315 - -
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Cca06g00825 528 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Cca06g00825 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 315 - -
Cca06g00825 528 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 315 - -
Cca06g00825 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 526 IPR027417 -
Cca06g00825 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cca06g00825 528 Gene3D - 352 528 IPR027417 -
Cca06g00825 528 CDD Arf1_5_like 365 523 IPR045872 GO:0003924
Cca06g00825 528 SMART WD40_4 1 38 IPR001680 GO:0005515
Cca06g00825 528 SMART WD40_4 177 219 IPR001680 GO:0005515
Cca06g00825 528 SMART WD40_4 222 261 IPR001680 GO:0005515
Cca06g00825 528 SMART WD40_4 41 80 IPR001680 GO:0005515
Cca06g00825 528 SMART WD40_4 277 316 IPR001680 GO:0005515
Cca06g00825 528 SMART WD40_4 135 174 IPR001680 GO:0005515
Cca06g00825 528 SMART arf_sub_2 348 528 - -
Cca06g00825 528 SMART sar_sub_1 348 524 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00825 Cca-Chr6 21261792 21273402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00825 140 315 Eukaryotic Initiation Factors Gene Family AT2G46290 26.842 2.91e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00825 K03246 - gmx:100793485 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00825 06 21261792 21273402 Cca06g00825 06 21261792 21273402 ECH