Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00822 ATGGCAGGAAGTAGGAACCCACAGATGTCGTTTGCTAATCAACTCACCATGAAGCCCCAACAGGTTCTATGTTGCGCGTCTGAGTATCGGGATCTCTCTGTTCCGCCGGCGAAAACTCCGCCCCCAGCTCCGTCTCAATCTCCGCCACCAGCTCCTTCTGAAACTCCGCCACCGGCTCCGTCTCATTCTCCGCCGCCAACTCCTCCACGGTCTCCGCCGCCGACTCCGCCGCGTTCCCCACCACCTTCCCCTCCTCCGCAGAGTCCACTACCGAAACAATCCGCACCGCCTCCGTCTAAATCTTCGCCGCCTCCGTCAACTCCCCCGCCGGTAAAAGGTTCAACTCCTCCACCCTCCCCGTCGGTTccaccgccggcgccgccgctgccttcaccgccaccaccTCAAAACTCGCCTCCAGCACAACCCGGTGCCCCTCCTCCGCTTCCACTTTCGCCTCCAATTCCCGCCTCAACTCGACCTTCACCGGCTTCCCCTGTCACTCCACCGGCGCAGGCGACCGGTGGGCCAAGACGCCCTACACCGCCGCGATCACTGCCGGTTTCCCCACCAAAATCAGGCGTTGCTCCCTCTCAGAGCAAGCATCCGTCCACGTCATCTAGCTCCATCAATAGCGCAGGCGAACTTGTTGGTGTTACTCTCGCCGGGCTTTTCATCCTCGCGTTTCTTGCTCTAGTTATTTACTTTATAATATGGAGGAAGAAAAAGCGAGAGAATATCTATGCTCAGCCACCCCATGGGAAACCTCATATCGAAGGAGGTGATGATGTGCATTACTACGTAGAGGATCCTGGTTTTGGGAATCTTCAAGGTGCCATGCATCTAAGAACTCCTTCTGATAACGGTCAGGGCCAGCACATGAACCCTGGTCAGATGGTTTTCACCTATGAGAAGATTGCGGAGATCACTAACGGGTTTTCCAGAGAGAACATAATAGGGGAAGGGGGATTTGGATATGTTTACAAGGCTTCCATGCCTGATGGTAAAGTGGGGGCGGTTAAGATGTTGAAGGCTGGTAGTGGGCAGGGAGAAAGGGAGTTCAGGGCTGAGGTGGATATTATCAGCCGTATCCATCATCGGCATTTGGTCTCACTAATTGGTTTTTGCTTAGCTGAACAGCAAAGAGTGCTTATATATGAGTTCGTTCCTAATGGGAATCTCAGTCAGCACTTGCATGGAAATGAATTGCCTGTTTTGGATTGGCCCAAGAGGATGAAGATAGCAATTGGCGCTGCCAGGGGACTGGCATATCTCCACGAAGGCTGCAACCCGAAGATTATTCACAGAGATATTAAATCGCCAAACATACTTTTGGATGATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGGCTAACGGACGATGCTAATACCCATGTATCTACTAGGGTGATGGGGACCTTCGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACTGATAGATCGGATGTTTTCTCTTTCGGAGTTGTCCTCCTTGAGCTTATAACAGGGAGGAAACCCGTTGATACAACGCAGCCCATAGGAGAGGAGAGTTTGGTTGAATGGGCTCGTCCACTTCTCCTTCGTGCAGTTGAGACAGGTGACTTTGCTGCACTAGTAGACCCTAGGCTTGAAAATCAATACATTGACAGTGAAATGTTCAGAATGATTGAGGCATCTGCAGCATGTGTTCGCCATTCTGCTCCGAAGCGACCTCGTATGGTTCAGGTGTCAAGAGCCTTAGACAATGGTGATAAACTATATGATCTATCTAATGGGGTGAAATATGGTCAGAGTACTATTTATGATTCTGGCCAGTATAATGAAGACATTATGAGATTCAGAAGGATGGCTAATGGCAGTTTTGGTGATTCTGAGTTTGATACGTACAGTACAGATTACCGATCAACTGTTTCAAGAGAAATGTCTGGGCCCAGACATGCAAGGATGCCATAG 1971 0.4942 MAGSRNPQMSFANQLTMKPQQVLCCASEYRDLSVPPAKTPPPAPSQSPPPAPSETPPPAPSHSPPPTPPRSPPPTPPRSPPPSPPPQSPLPKQSAPPPSKSSPPPSTPPPVKGSTPPPSPSVPPPAPPLPSPPPPQNSPPAQPGAPPPLPLSPPIPASTRPSPASPVTPPAQATGGPRRPTPPRSLPVSPPKSGVAPSQSKHPSTSSSSINSAGELVGVTLAGLFILAFLALVIYFIIWRKKKRENIYAQPPHGKPHIEGGDDVHYYVEDPGFGNLQGAMHLRTPSDNGQGQHMNPGQMVFTYEKIAEITNGFSRENIIGEGGFGYVYKASMPDGKVGAVKMLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGFCLAEQQRVLIYEFVPNGNLSQHLHGNELPVLDWPKRMKIAIGAARGLAYLHEGCNPKIIHRDIKSPNILLDDAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDTTQPIGEESLVEWARPLLLRAVETGDFAALVDPRLENQYIDSEMFRMIEASAACVRHSAPKRPRMVQVSRALDNGDKLYDLSNGVKYGQSTIYDSGQYNEDIMRFRRMANGSFGDSEFDTYSTDYRSTVSREMSGPRHARMP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00822 656 ProSiteProfiles Protein kinase domain profile. 313 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00822 656 SUPERFAMILY Protein kinase-like (PK-like) 292 585 IPR011009 -
Cca06g00822 656 Pfam Protein tyrosine and serine/threonine kinase 316 582 IPR001245 GO:0004672|GO:0006468
Cca06g00822 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cca06g00822 656 CDD STKc_IRAK 319 588 - -
Cca06g00822 656 MobiDBLite consensus disorder prediction 35 190 - -
Cca06g00822 656 PANTHER RECEPTOR-LIKE KINASE 64 652 - -
Cca06g00822 656 MobiDBLite consensus disorder prediction 32 210 - -
Cca06g00822 656 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Cca06g00822 656 Gene3D Phosphorylase Kinase; domain 1 278 388 - -
Cca06g00822 656 MobiDBLite consensus disorder prediction 192 210 - -
Cca06g00822 656 PRINTS Proline rich extensin signature 36 52 - -
Cca06g00822 656 PRINTS Proline rich extensin signature 57 69 - -
Cca06g00822 656 PRINTS Proline rich extensin signature 73 94 - -
Cca06g00822 656 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 64 652 - -
Cca06g00822 656 SMART serkin_6 313 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00822 Cca-Chr6 21244213 21248419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00822 169 648 Trihelix Transcription Factor Family AT1G70460 55.424 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca06g00822 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00822 - - gmx:100807815 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00822 06 21244213 21248419 Cca06g00822 06 21244213 21248419 ECH