Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00811 ATGATCCGAAACACAAACGGGTCGGGTCGCCGGATACTAACCTCCCCGGCGATTCTTCCATGCGAAAACAtcgctctctctactcttctctcttcactcatcgctctctcCGACGCCGTTTCCACTTTCCAACGCAAGTCCTTCCCTTGCAACAACCGGAACGCGAGAAACGCGATTCGTTTGACTCTCCTTCTCCAACCTTTTCTACATGAGATCCGAGACAACAATTCGGGTCTATCCGACCCGGCTACCCTCAGCTTGTCGGAGCTCCATTTCACCTTCCAGAAGCTTCTCTTCCTCCTGGAAGACCTCGCCCGCGAAGGGGCCAAGCTTTATCTCTTGATGGAATCGGATCGGGTCGCTTCTCAGTTTCGGGTCATATCCAGATCCGTGGCCACTTCTTTGGACGTGTTCCCTTTCGGGTCTGTGGATATCTCTGATGAAACTAAAGAGCATGTTTTGCTGCTGAATGAACAAGCAAGGAGGGCAAGGTTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTGGTGTCGGGTTTGACCCGGTTTGAGAACCGGGTTGCCCCGGATGAGGGTGAGTTGAAGTGGGTTCTTGAGTATATTGGGGTTAGAGGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGTGAGATTGGGTTTGAGAGCTTGAACGAGGAGAAGAGAAAAGTGGGGTTTTTAAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGTGTGGTGATGGAGGTTGTTGATTGTGAAGAAAGTAAGAGAAAAAATGATGCAAGTGAGAAAAGTCCGAGTTTTTGTTTTGTTAACTCGGATGATTTTCGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACAATAGAGACAGGTCATAGTTATGATCGTTCATCGATTCTGAAGTGGTTTAGAAGTGGAAATGCCACGTGTCCAAAGACGGGTAGAAGGCTTAATAGCACTGAGTTGGTTCCTAACTTGGTGCTTCGAAGGTTGATTCAGCAATATTGCTATGCGAATGGCATAGACACAAGCATTCCCATTGTTAGGAATCGTGATATCACTAGGACAATGGAGCCTGGGAGTGTGGCAGCAGAAGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGAAAGAATTGAGAATGGAAGTGGGGAAGAGAAGAACAGAAGTGCATTTGAGATAAGGCTTCTTTCCAAGGCAAGCATTTTTAGTAGGTCTTGTTTGGTGGAAGCAGGTTTGGTTCCTCTTTTGTTGAAGTTGTTGTCATTAAAGGATTCTTTGACTCAAGAGAATGCTGCTGCAGCACTTCTAAACCTCTCAAAATGTGCAAAGAGTAGGAGCATGATGGTTGAGAAATGGGGTTTGGAATTGATTGTTGGTGTGTTAAAAGATGGTGTGAAGATTGAAGCCCGCCAACATGCTGCTGCTGTGTTGTTTTACCTTGCTTCAAGTGCCGAATATGGGAACTTGATAGGGTTGGAGCCAGAAGCAATTCCATCATTGATAAGGCTAGTCAAAGGTGGCTCTGACCGAAGCAAGAAAAACGGTCTGGTTGCAATTTTCGGCCTCCTTAAGCACCCTAAGAACCACACAAGGGTGCTTCAAAGTGGTGTAGTTCCTTTGCTAGTTGAGATCCTAAAAGAGTGTGAAAAGGAAGACATAATCACTGACTCATTGGCCATTCTAGCAACTCTGGCAGAGAAAAGCAGTGAGGGTGTATCAACAATCCTTCATTGTGGGGCTATGCATGTAGGTGTTGAGATTTTGAGTTGTTCCACTTCAAGGTTGGGGAAGGAGCACTGTGTGGCATTGTTGCTTTCTTTGGCAATAAATGGTGGAGAAGATGTTGTTGCTTGTTTAGTGAAAAACGCTTCTCTTATGGGATCATTGTATTCTCAACTCAGTGAAGGAACATCTCGAGCAAGCAAGAAAGCAAGTGCTCTCATAAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGATTCAAGGCTTCAGTTATTCCACAAGAACAGTTCATTCATGTTTGGTAA 2058 0.4422 MIRNTNGSGRRILTSPAILPCENIALSTLLSSLIALSDAVSTFQRKSFPCNNRNARNAIRLTLLLQPFLHEIRDNNSGLSDPATLSLSELHFTFQKLLFLLEDLAREGAKLYLLMESDRVASQFRVISRSVATSLDVFPFGSVDISDETKEHVLLLNEQARRARFEFEEEDKRVVMSVVSGLTRFENRVAPDEGELKWVLEYIGVRGWSECNKEVKFLEGEIGFESLNEEKRKVGFLSSLMGFMSYCRCVVMEVVDCEESKRKNDASEKSPSFCFVNSDDFRCPISLELMSDPVTIETGHSYDRSSILKWFRSGNATCPKTGRRLNSTELVPNLVLRRLIQQYCYANGIDTSIPIVRNRDITRTMEPGSVAAEGAMRMLASFLKERIENGSGEEKNRSAFEIRLLSKASIFSRSCLVEAGLVPLLLKLLSLKDSLTQENAAAALLNLSKCAKSRSMMVEKWGLELIVGVLKDGVKIEARQHAAAVLFYLASSAEYGNLIGLEPEAIPSLIRLVKGGSDRSKKNGLVAIFGLLKHPKNHTRVLQSGVVPLLVEILKECEKEDIITDSLAILATLAEKSSEGVSTILHCGAMHVGVEILSCSTSRLGKEHCVALLLSLAINGGEDVVACLVKNASLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGFKASVIPQEQFIHVW 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00811 685 PANTHER U BOX DOMAIN-CONTAINING 4 675 - -
Cca06g00811 685 CDD RING-Ubox_PUB 281 322 IPR045210 -
Cca06g00811 685 Pfam U-box domain 279 347 IPR003613 GO:0004842|GO:0016567
Cca06g00811 685 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Cca06g00811 685 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 675 - -
Cca06g00811 685 Gene3D - 361 668 IPR011989 -
Cca06g00811 685 Pfam Armadillo/beta-catenin-like repeat 413 448 IPR000225 GO:0005515
Cca06g00811 685 SUPERFAMILY ARM repeat 373 660 IPR016024 -
Cca06g00811 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Cca06g00811 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cca06g00811 685 SMART arm_5 534 575 IPR000225 GO:0005515
Cca06g00811 685 SMART arm_5 450 491 IPR000225 GO:0005515
Cca06g00811 685 SMART arm_5 408 449 IPR000225 GO:0005515
Cca06g00811 685 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Cca06g00811 685 SUPERFAMILY RING/U-box 278 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00811 Cca-Chr6 21114564 21116779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00811 1 685 U-box Gene Family AT1G60190 45.207 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00811 - - gmx:100795816 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00811 06 21114564 21116779 Cca06g00811 06 21114564 21116779 ECH