Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00810 ATGGCTTCTTCAATGAGGATCTCAAGGCTACTCTCTCGTTCTATTCTTCCTGCTTCCACTACTTTGTTTTCTAGAGGAGGGAGTGGTGCCCTTGGCACCCGGCTCAATAAGTACAGCACTGCTGCTGCCATTGAAGAACCAATTAAACCAACAGTTAAAGTAGAACACAACCAGCTCCTAATCGACGGAAAATTCGTTGATGCTGCTTCTGGCAAAACTTTTCCAACGATCGATCCAAGGACAGGAGATTTGATTTCTCATGTTTCTGAGGGTGATCATGAAGATGTTGATCGCGCAGTCGCAGCTGCGCGCAAAGCCTTTGACCATGGACCTTGGCCTAAGATGACAGCCTATGAAAGACAAAGGATATTGCTGCGTGCTGCTGATCTGTTTGAAAAGCACAACGATGAGCTTGCTGCACTTGAGACTTGGGATAATGGGAAGCCATATGAACAATCTGCTAAAATTGAAATTCCAATGCTGGTTCGCCTGTTTAGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGGCCATATCATGTGCAGACATTGCATGAACCTATTGGTGTTGCTGGTCAGATCATCCCATGGAACTTCCCTCTACTGATGTTTGCCTGGAAGGTTGGGCCAGCATTGGCCTGTGGTAATACCATTGTTCTCAAAACAGCTGAGCAGACTCCGTTATCTGCTTTGTATGCATCTAAGTTGCTTCATGAGGCTGGACTTCCTCCTGGTGTTCTGAATGTCATATCTGGCTTTGGTCCAACTGCTGGTGCTGCTATTGCTAGTCACATGGACATAGATAAGCTTGCTTTCACTGGTTCAACCAAAACTGGAAAAGTTGTCCTTGAACTGGCAGCTAGAAGTAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCTTTTATTGTGTGTGAAGATGCTGATGTAGATGAGGCTGTTGAGCTAGCACACTTTGCATTATTCTTTAATCAGGGGCAATGCTGCTGTGCTGGGTCTAGAACATTTGTACACGAACGTGTGTACGATGAATTTATTGAGAAAGCGAAGGCACGTGCTTTGAAGCGTGTAGTTGGTGATCCATTCAAAGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTGAGAAAATACTGAAGTATATTAGATCTGGTATTGAAAGTGGAGCTACACTTGAAGCTGGAGGAGATAGATTTGGCAAATCTGGCTTCTATATTCAACCTACTGTATTCTCAAATGTCAAGGATGACATGCTGATTGCAAAGGAAGAGATCTTTGGCCCAGTGCAATCCATATTAACATTCAAGGACCTTGGTGAGGTGATTCAAAGAGCAAATAACACAAAATATGGGCTTGCAGCAGGGGTGTTCACAAAAAACATTAACACAGCTAACACTTTGACACGAGCATTGAGAGTTGGAACAGTGTGGGTGAACTCCTTTGATACATTTGATGCAGCAATTCCCTTTGGAGGGTACAAGATGAGTGGCCACGGAAGAGAGAAAGGAGAATACAGTCTCAAAAACTACTTGCAAGTGAAGGCTGTTGTTACATCCTTGAACAACCCAGCTTGGCTTTGA 1614 0.4418 MASSMRISRLLSRSILPASTTLFSRGGSGALGTRLNKYSTAAAIEEPIKPTVKVEHNQLLIDGKFVDAASGKTFPTIDPRTGDLISHVSEGDHEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLFEKHNDELAALETWDNGKPYEQSAKIEIPMLVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYASKLLHEAGLPPGVLNVISGFGPTAGAAIASHMDIDKLAFTGSTKTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDEAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFIEKAKARALKRVVGDPFKGGIEQGPQIDSEQFEKILKYIRSGIESGATLEAGGDRFGKSGFYIQPTVFSNVKDDMLIAKEEIFGPVQSILTFKDLGEVIQRANNTKYGLAAGVFTKNINTANTLTRALRVGTVWVNSFDTFDAAIPFGGYKMSGHGREKGEYSLKNYLQVKAVVTSLNNPAWL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00810 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 307 496 IPR016163 GO:0016620
Cca06g00810 537 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 25 537 - -
Cca06g00810 537 SUPERFAMILY ALDH-like 52 533 IPR016161 GO:0016491
Cca06g00810 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 525 IPR016162 GO:0016491
Cca06g00810 537 CDD ALDH_F2BC 54 529 - -
Cca06g00810 537 Pfam Aldehyde dehydrogenase family 65 527 IPR015590 GO:0016491
Cca06g00810 537 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 303 310 IPR029510 GO:0016491
Cca06g00810 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 331 342 IPR016160 GO:0016491
Cca06g00810 537 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 25 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00810 Cca-Chr6 21107183 21112083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00810 3 537 Aldehyde Dehydrogenase Gene Family AT3G48000 76.909 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00810 K00128 - gmx:100786773 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00810 06 21107183 21112083 Cca06g00810 06 21107183 21112083 ECH
Cca06g00810 06 21107183 21112083 Cca11g00668 11 11090208 11094317 PCT