Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00808 ATGGATCTAGAAGGTGGAACACGTGTTCGGCACCATGCTAGCAAGAGAGAGTCGTCGTGGAGAGCGGTGGCGACGCTGGCGTACCAGAGTCTGGGAGTGGTGTACGGCGATTTGAGCATTTCGCCGCTGTACGTGTTCAGAAGCACGTTTGCGGAGGACATTAAGCACTCGGAGAGCAACGAGGAGCTTTACGGCGTTTTGTCGCTGGTGTTCTGGACCATAACGCTGGTTCCGCTGGTGAAGTACGTGTTCGTGGTGCTCAAGGCTGACGACAACGGCGAGGGAGGCACGTTCGCCTTGTACTCGCTGCTGTGCCGCCACGCCAGGGTGAGTTCTCTCCCCAATTGCCAGGTGGCGGACGAGGACCTCTCCGAGTACAAGAAGGACTCTCGCGGCGTCGCTTCCGAGAGGAGCTTTGCTTCGAGGCTTAAAGCCACGTTTGAGAAGCGCAAGGTTCTGCAGAGGGTTTTGCTGGTGCTGGCTTTGATTGGGACTTGCATGGTCATTGGGGATGGCATCCTCACACCGGCTATTTCTGTTTTCTCAGCTGTGTCTGGATTGGAGCTTTCAATGTCCAAGGAGAATCATGCATATGTTGAAGTTCCAGCTGCATGCATCATATTGATAGCCTTGTTTGCCCTTCAACATTATGGCACACACAGAGTTGGCTTCTTGTTTGCTCCTGTAATTATCACATGGCTTTTCTGCATTAGTGCCATTGGGCTATATAATATATTTTACTGGAATCCTCTTGTATACAAAGCACTCTCCCCATATTATGCTTTCCAACTTATAAGGAAAACTCAGAAAGGAGGTTGGATGGCCCTTGGTGGAATTTTGCTGTGCATAACAGGATCAGAAGCCATGTTTGCTGATCTTGGGCACTTTACACAATTATCAATCAAGATTGCTTTTACTTCTGTGGTTTATCCGTCTTTAATTCTTGCATATATGGGGCAAGCTGCTTATCTATCTAAACATCATGAGATTGAGCAAGATTATCACTTTGGGTTTTACGTATCTGTACCAGACAAATTGAGAtggcctgttttgattatagccatacttgctgcagtcgtgggaagtcaagccatcatcactggaacattctcaattatcaagcaatgctctgcattaagttgtttccctagagtcaaagtgattcacacatcatcaaaaattcatgggcaaatatatatccctgagatcaattggctattaatgCTGTTATGTTTGGCAGTAACTATTTGTTTCAGAGACACAAAGCGCCTTGGTAATGCCTCAGGTTTGGCAGTTATCACTGTGATGCTGGTGACCACCTGTTTGATGTCACTGGTTATTGTACTATGCTGGCACCAAAATGTTCTCCTTGCACTTGGGTTTATTTTCATATTTGGCACCATTGAGGCTCTTTTCTTCTCTGCTTCTCTTATCAAGTTCCTGCAAGGAGCATGGGTGCCTATTGCATTGGCTCTTGTATTTCTGACTTTCATGTATGTTTGGCACTATGGCACACTGAAAAAGTATGAATATGATGTTCAAAACAAGGTTTCCATCAACTGGCTACTCGGCCTAGGTCCCAGCATAGGTATTGTACGAGTGCGCGGGGTTGGCCTTATACACACCGAGCTAGTGTCTGGAATTCCAGTAATCTTCTCCCACTTTGTAACCAACCTCCCAGCCTTTCATCAGGTCCTAGTTTTTCTCTGCATCAAGCACGTGCCAGTTCCGCATGTCAGACCCGAGGAACGGTTTCTAGTTGGTCGCATTGGTCCAAAAGAGTTCAGACTCTACCGATGCATAGTGCGATATGGATACCGCGATGTCCACAAAGATGATATAGATTTTGAGAATGATCTTTTATACAGCATAGCAGAGTTCATACGCACAGAAAGTACTGCATTGAGCTCTTCAAATGATGAGCCTGTAAAGGATGACAGAATGGCAGTTGTAGGGACATGTTCTACACATTCCATGTTGATGAGTGAGGATAATGTTGAGAATGTAGACATGCCAGGGACATCTGAACTAAAGGAGATAAAGTCACCCCAGGTGATCCAGCAGAAGAAAAGGGTAAGATTTTTGGTACCAGAGAGTCCAAAGATTGACACAAGTGCAATGGAAGAGTTGGAGGAGGTGATGGAAGCCAGGGAGGCTGGGGTAGCTTACATTATAGGACAGACACACATGAGAGCCAAACCAGGGTCTAGCATGCTGAAGAAAATAGCCATTAATATTGTGTATGAATTCCTAAGAAGAAATAGCAGGGCACCCTCTTTTGTCACTGGTGTGCCTCATGCATCATCTCTGGAAGTTGGGATGATGTACCAAGTTTAA 2337 0.427 MDLEGGTRVRHHASKRESSWRAVATLAYQSLGVVYGDLSISPLYVFRSTFAEDIKHSESNEELYGVLSLVFWTITLVPLVKYVFVVLKADDNGEGGTFALYSLLCRHARVSSLPNCQVADEDLSEYKKDSRGVASERSFASRLKATFEKRKVLQRVLLVLALIGTCMVIGDGILTPAISVFSAVSGLELSMSKENHAYVEVPAACIILIALFALQHYGTHRVGFLFAPVIITWLFCISAIGLYNIFYWNPLVYKALSPYYAFQLIRKTQKGGWMALGGILLCITGSEAMFADLGHFTQLSIKIAFTSVVYPSLILAYMGQAAYLSKHHEIEQDYHFGFYVSVPDKLRWPVLIIAILAAVVGSQAIITGTFSIIKQCSALSCFPRVKVIHTSSKIHGQIYIPEINWLLMLLCLAVTICFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHQNVLLALGFIFIFGTIEALFFSASLIKFLQGAWVPIALALVFLTFMYVWHYGTLKKYEYDVQNKVSINWLLGLGPSIGIVRVRGVGLIHTELVSGIPVIFSHFVTNLPAFHQVLVFLCIKHVPVPHVRPEERFLVGRIGPKEFRLYRCIVRYGYRDVHKDDIDFENDLLYSIAEFIRTESTALSSSNDEPVKDDRMAVVGTCSTHSMLMSEDNVENVDMPGTSELKEIKSPQVIQQKKRVRFLVPESPKIDTSAMEELEEVMEAREAGVAYIIGQTHMRAKPGSSMLKKIAINIVYEFLRRNSRAPSFVTGVPHASSLEVGMMYQV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00808 778 Pfam K+ potassium transporter 28 608 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cca06g00808 778 PANTHER POTASSIUM TRANSPORTER 6 1 778 - -
Cca06g00808 778 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 778 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cca06g00808 778 TIGRFAM kup: potassium uptake protein 26 778 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00808 Cca-Chr6 21043009 21048202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00808 1 778 Inorganic Solute Cotransporters AT1G70300 73.477 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00808 K03549 - gmx:100793141 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00808 06 21043009 21048202 Cca06g00808 06 21043009 21048202 ECH
Cca06g00808 06 21043009 21048202 Cca11g00662 11 10943763 10949300 PCT
Cca11g00663 11 10998062 11005874 Cca06g00808 06 21043009 21048202 PCT