Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00807 ATGGCTTCAAGATCATATGCTAATCTACTAGACTTGGCTGGAGGTTTACTGGATATTCCTCACACCCCAAGAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGACCTGGACGTTTGTGGTAGATATGATGGGGATTCGGATGTTAGCTCTTCTGGATATCGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGGTAAATGGTGTTTCAGTTTGGATGAGGATTCAATTTTGTTACAATTAAAAGATGGTTTTTCTTCTGACACTGAGGTGATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCCCATGAGCAGGAAGAAGTTGCTCAGAAATTACTGGAGGACTTTAATTGCATTCCCACCTTTCTACCCCATGATCTCCAGAAAAAGTTCTATCTTGGCTTTTGCAAACAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCATGGTGATCGGTTTGACCGCATGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATCAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCAACATTTCTGAGGAAGCGGTATAATCGAGTTAAACTTGGATTCTTTCTTCACAGTCCTTTCCCATCATCTGAAATTTACCGAACCTTGCCGGTAAGGGATGAAATTCTGAGAGGATTGTTGAATTCTGATTTAATTGGTTTCCATACATTTGATTATGCTCGTCACTTCCTCTCTTGTTGCAAAAGAATGCTTGGTCTTGACTATGAATCTAAACGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTTTGCCTGTAGGCATTCATATGGGTAGGCTTCAATCGGTATTAAATCTTCAATCTACATCAGCTAAATTGAAAGAGATTCAGGAAGAGTTCAAGGGTAGGAAGGTGATTATTGGTATTGATGACATGGATATCTTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGCAACAGAATCCTGATTTGCAGGGCAAAGTTGTGCTAGTACAGATTGTGAATCCTGCTAGGAGTTCAGGCAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCGGAGAATTAATGATACTTATGGCTCAAACCAGTATCGACCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAGAAGAGTGCTTATTATGCTGTAGCAGAATGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAATATATTGTCTGTAGACAAGGAACTACACAGATGGATAAAGCTTTGACTAGAAAAAGTGATTCTCCCCGTACAAGCATGCTTGTTGTTTCTGAGTTCATTGGTTGTTCTCCTTCTCTAAGCGGAGCAATCAGGGTCAATCCATGGAACATAGATGCTGTGGCTGATGCTCTGTATTCAGCTGTTACTATGAATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACCGGTACATTAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTAGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTGTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTTGACCACATTGTTTCAGCATACAAAAGAACCTCCAGAAGAGCCATATTTCTTGATTATGATGGTACCATCATACCAAAATCATCTATTAACAAATCCCCCGGCCCTGAAGTCATATCTGTGCTAAATGATATGTGTAACGATACTAAAAATACTGTGTTCATAGTGAGTGGAAGGGGAAAAGATTCTTTAAGtgattggtttacttcatgcaaaatgattggacttgcagccgaacatggatacttcctaaggtggagtaaagattctgaatgggaaaccagtaacttgtctcctgatcttgattggaagaagatcgtggaacctgtcatgcagttgtatacggaggcaactgatggatctaatattgaaactaaagaaagtgctttggtgtggcatcatcaagatgcggaccctgattttggctcttgtcaggccaaagaattgttaaatcatctagaaagtgtccttgctaatgaacctgcagttgttatcaggggccagcatattgttgaggtcaagccacagggattaaacaagggcttggtagctgataaggttctttccacaatggtcaatggtggtaatccaccagactttgtgatgtgcgtgggagatgatatttctgatgaagacatgtttgagagcatattgaggacagtttcatgcccatcattgccaataactccagagatctttgcctgcactgttggtcagaaacccagcaaggccaaatattatcttgatgatcctgctgatgtcatgaagttgcttcaagGCCTTGGTGCTTCATCTAAGCCAAAGCCTAGGCATCTACCTCAATTCCAAGTTTCTTTTGAGAGCACAGTTTGA 2583 0.3132 MASRSYANLLDLAGGLLDIPHTPRTIPRIMTVPGVISDLDVCGRYDGDSDVSSSGYRERKIIVANMLPLQAKRDIETGKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIDAHEQEEVAQKLLEDFNCIPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPMFPDHGDRFDRMLWQAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLQSVLNLQSTSAKLKEIQEEFKGRKVIIGIDDMDIFKGISLKLLAVEQLLQQNPDLQGKVVLVQIVNPARSSGKDVQEAKKETYLIARRINDTYGSNQYRPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTTQMDKALTRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADALYSAVTMNDSEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTSRRAIFLDYDGTIIPKSSINKSPGPEVISVLNDMCNDTKNTVFIVSGRGKDSLSDWFTSCKMIGLAAEHGYFLRWSKDSEWETSNLSPDLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVIRGQHIVEVKPQGLNKGLVADKVLSTMVNGGNPPDFVMCVGDDISDEDMFESILRTVSCPSLPITPEIFACTVGQKPSKAKYYLDDPADVMKLLQGLGASSKPKPRHLPQFQVSFESTV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00807 860 TIGRFAM T6PP: trehalose-phosphatase 589 836 IPR003337 GO:0003824|GO:0005992
Cca06g00807 860 Gene3D Glycogen Phosphorylase B; 308 528 - -
Cca06g00807 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Cca06g00807 860 Gene3D - 720 849 IPR023214 -
Cca06g00807 860 Gene3D - 590 708 IPR023214 -
Cca06g00807 860 CDD HAD_TPP 592 833 - -
Cca06g00807 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 845 IPR001830 GO:0003824|GO:0005992
Cca06g00807 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Cca06g00807 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 8-RELATED 1 845 - -
Cca06g00807 860 Gene3D Glycogen Phosphorylase B; 48 302 - -
Cca06g00807 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Cca06g00807 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Cca06g00807 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Cca06g00807 860 SUPERFAMILY HAD-like 591 838 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00807 Cca-Chr6 21006646 21011359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00807 1 860 Trehalose Biosynthesis Gene Families AT1G23870 73.733 0.0 1352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00807 K16055 - gmx:100818536 1667.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00807 06 21006646 21011359 Cca06g00807 06 21006646 21011359 ECH
Cca06g00807 06 21006646 21011359 Cca11g00658 11 10824277 10829519 PCT