Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00805 ATGTCTGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTCCATGATGCAGGCCTGGATCAGGCCTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATAGGCTTGAAGGAGCCTTTTGATTGTGCTGTTTGCCTATGTGAGTTTTTGGAGCAAGACAAGCTGAGGTTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGCTGTCCAATTCAACTTGCCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCTTTGAGAACTCAACTTTTGACCTTGAAAGTCAATGTGAGGAAGATGGGGTTTCAGGCAGTGGTGGAGGTGCTGTTGCTTCTGTTAACAAGACAGTAGAAAGTCACATAGTGAGTGGGAAAAGAGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTAGTAATGGAGATGGAGTGGAGAGAGGTGAAGGAGAGAGTAGTAGTGGTAATTTGGATGTCAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCAGATTCAGATCTGAGAGTGGCTTTAGGCCCTTGTAGTAGAGGTGATGGAGGCAGCAGTATGAGACAATTCAAGGGAAGAGGAGCCACAAATGGAAGTTCTTTCATTGATGGGGATGTTGAGGGAAAGAAAATCAGCATTGCAAGGAGAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGAAAAGATAAGTTGACAAGTTCATCAGATGTTGATTTCCATAATTCTGCTGTCACTTCAACTTTGCCATGGATGAATAAAGACAGAGGAAGATAA 837 0.4325 MSESDAYQRQLQQLFHLHDAGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSTFDLESQCEEDGVSGSGGGAVASVNKTVESHIVSGKRVFSVRLGKFRSTSNGDGVERGEGESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPCSRGDGGSSMRQFKGRGATNGSSFIDGDVEGKKISIARRGESFSVSKIWQWSRKDKLTSSSDVDFHNSAVTSTLPWMNKDRGR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00805 278 Pfam Ring finger domain 46 89 IPR001841 -
Cca06g00805 278 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 270 - -
Cca06g00805 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 270 - -
Cca06g00805 278 SMART ring_2 47 88 IPR001841 -
Cca06g00805 278 SUPERFAMILY RING/U-box 26 95 - -
Cca06g00805 278 CDD RING-H2_PA-TM-RING 46 89 - -
Cca06g00805 278 ProSiteProfiles Zinc finger RING-type profile. 47 89 IPR001841 -
Cca06g00805 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00805 Cca-Chr6 20973658 20975134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00805 6 259 C3H Transcription Factor Family AT2G18650 43.007 1.26e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00805 - - gmx:100805154 457.218