Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00804 ATGTATAGGGTTCACTCTCAAATCCCTCACCCTATTCCTGCTCCATATTCTTCTTATGACACTTCTTCTTCATATTCCCCCTCAGGCTCTTATGTCTCTAACTACATAAAACATTCAGCTCCATCTCCAACTTATGGTTCATCAGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTAATTTTAGCAGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACGGGTCTTCTTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCTGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTCCATGATGCAGGCCTGGATCAGGCCTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATAGGCTTGAAGGAGCCTTTTGATTGTGCTGTTTGCCTATGTGAGTTTTTGGAGCAAGACAAGCTGAGGTTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGCTGTCCAATTCAACTTGCCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCTTTGAGAACTCAACTTTTGACCTTGAAAGTCAATGTGAGGAAGATGGGGTTTCAGGCAGTGGTGGAGGTGCTGTTGCTTCTGTTAACAAGACAGTAGAAAGTCACATAGTGAGTGGGAAAAGAGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTAGTAATGGAGATGGAGTGGAGAGAGGTGAAGGAGAGAGTAGTAGTGGTAATTTGGATGTCAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCAGATTCAGATCTGAGAGTGGCTTTAGGCCCTTGTAGTAGAGGTGATGGAGGCAGCAGTATGAGACAATTCAAGGGAAGAGGAGCCACAAATGGAAGTTCTTTCATTGATGGGGATGTTGAGGGAAAGAAAATCAGCATTGCAAGGAGAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGAAAAGATAAGTTGACAAGTTCATCAGATGTTGATTTCCATAATTCTGCTGTCACTTCAACTTTGCCATGGATGAATAAAGACAGAGCACATAACACAAAGGTGACGAAATGGTGGAAACTGAAATGTGGGGTGTGCAGAGATTTTCAGATCAGCGGCAGGAGAATGGTGGTTTGCGGCGGCGATGTGTGCATGGAGGATCTGTCGGAGAATCGAACATTGTGCATGAAACAAGTGTGA 1272 0.4308 MYRVHSQIPHPIPAPYSSYDTSSSYSPSGSYVSNYIKHSAPSPTYGSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLIKHGSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDAGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSTFDLESQCEEDGVSGSGGGAVASVNKTVESHIVSGKRVFSVRLGKFRSTSNGDGVERGEGESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPCSRGDGGSSMRQFKGRGATNGSSFIDGDVEGKKISIARRGESFSVSKIWQWSRKDKLTSSSDVDFHNSAVTSTLPWMNKDRAHNTKVTKWWKLKCGVCRDFQISGRRMVVCGGDVCMEDLSENRTLCMKQV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00804 423 SMART ring_2 144 185 IPR001841 -
Cca06g00804 423 Pfam Ring finger domain 143 186 IPR001841 -
Cca06g00804 423 SUPERFAMILY RING/U-box 123 192 - -
Cca06g00804 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 191 IPR013083 -
Cca06g00804 423 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 367 - -
Cca06g00804 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 367 - -
Cca06g00804 423 CDD RING-H2_PA-TM-RING 143 186 - -
Cca06g00804 423 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00804 Cca-Chr6 20971090 20973192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00804 71 356 C3H Transcription Factor Family AT2G18650 41.905 1.75e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00804 - - gmx:100805154 541.191