Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00802 atgactaacataagatttcttaaattctattatggagagtgcactagcagatgtaaaatataccttcctaagaatggtcttaagtcattgtctgacaaattaaggtaccttcaatggcatgggtactgtttggagtctttgccatcaaccttttctgctaaattgcttgttgagctttccatgccctacagcaaccttcaaaggctttgggacggaattcagaatcttgtgaatttaaaggacattgaccttagattctgcgaaaacctggttgaggtcccagacttatctatggccacaaatctcgaagatttatctctttctcagtgtaaaagtctgcgtcaagttcatccatccatcttgtctctcccaaagcttcaagttctagatttagaaggctgcactgagattcaaagccttcaaaccaacgttcattcaaaatctctccaaagcatccgtctcagcaactgctcatccctcaaagagttttcagtatcctcagtggaacttcagagattgtggttagatggcacaaatatccaggaacttccctcatcaatttggcattgtgcgaaactccagtttattgacgtacaaggttgtaacgatctcgatgattttggggaccagttatctcgtgatccaagaacagcatcttttaataatgtggtcctttctgggtgcaaacacctcaatgcatcgaatctgcatcttattctcgatagtttgcggtctttaacattgctagagttggaaaattgttgcaacttacgaacactccctgacagcattggtgtgttatcatcattacagcgcttaaagctaggggggagcaatgttgagagcttgcctgcaagcatcaagaacctttcgatgctgagaaggctttatttagataactgcatgaaacttgtgtcactgccagaacttccacagtctctgtggttgttaagtgCAGttaattgtacatctttagtgacaaacttcactcaactgaacataccctttcaactgaaacatggacttgaagatcgccctcaatcttttttcctccctatttcccatgttcctgacagtttcagctttcatgctgaagcggcttcagtaacaattcctcatctaccactttctgacttatgtggcttaattttttgtgtctttctttCTCAGTCACCACCACATGGCAAATATGTTTATGTTGATTGTTTCATCTACAAAAATTCTGAGAAGATCGATGGCAGAGGCGCCTCATTGGGAGATCAGAATTTGATTTTGGATCATGTGTTTCTTTGGTTTGTGGACACCGCAAAATTTGGAGACGATTCCTTGGCTAGGAGATTACAAAAAGGTGAAGCGTGTGATTCTTCCAACGTATCATTTGAATTCTTGGTGGAAGATGAGGATGGAGAATGGTCAACGAAGGGGATAAAGGGGTGTGGGATCTACCCCATTTATGCCTCTGAACAAAAGGGATTGGAGGTGGAGTTTGGGGATAGTTCTAGAGATATTGTTGAGTTGGAACTCAAAAGCTCTAATGATATCGATGAGTTACAAGTCAAAGGATCTAAACATGACAATGAAGATGACCAGACTGAGAAAGTGCAGCAAGTTATGCACCAAAGAATTACTACAGGTTTGCAGCATGTAAAAGTGGACTCCGATGAAAATTCTTCCTGTAACAATTTCATAGCTTTAGCAGCGGATGGTACAAAGAGAAAACCACCAAGTTTCGAGGAAGAGAATTACTATATAACTTCAACACCTGAAAACCAAATTATCCTCATTGACAATCCAAGTACCTCCAACATCGATTCAAAGCAGACTATTGAAGTGTTAGAAGAAAAAGACTTGGCAAACAATGAAGTAAACGAATGTTCTGATCGAGTCACGTCTGAGATATTTCATGCTCTTGTGGAGAATGACAACCCCCATCTTGAACCAGATTGGGATCCAATTACTGAGCTTGAGAGCTTGTTATTTGATAGTTATAAGAGTTTTCCCATGTCAACTCTCTCAACTACTGTTTCAGAGATTGAAGTACAGTATCCAAATGTGGCAGCTATCCTTGAAAAATTAGACACCCTTTTGGAAACCTCCCTTGAAACTATCTGTTCTGATGCTGAAGTCAAGCAACAATGCCATCATGTTTTGGATCAACTTGTCCAATTTCAAGACCATGTTCCCATTAAGCTTCATCCTGTAATTAACAAATTAAAAACTTTCATTGAAGGTGTTGATGTCAGGTTTCTGACTGCCCAAAAAACTATCCAAGATTATGATCAGCTGCTCCAATCAAGGTCTCTTCTATCAAAGCATTTGGAAAGTGCCAAAGCTCGCCAATACCAAATTAATTCAAAAGTCTCTGAAGGTAAAATACAATTGGAAAAGATCAATTCTGAGATTGTTGAACTAGAACAAAGGATAAGTGTTTTGGTTGAGACAAGAGACAGGCTAAAGAGTGCCTTGGACAATTGTGATGTTGAAAATAACAAGTTAAAGAATCAGGTTGCAAAATGGGTGCCAAAATGCAAGACAGTCATCACAGCTTTGAAGGAGTCCACGATTTCTTACAAAGTGGCCATAACCAATAAGAAGAAAGATGAAGATGAATGGATTGATCTGAAGAAAACCTTTGCAGCTATGAGATTTGAATTGCCATCAATTTATACATATTTTGACATTAGGTCATAG 2691 0.2189 MTNIRFLKFYYGECTSRCKIYLPKNGLKSLSDKLRYLQWHGYCLESLPSTFSAKLLVELSMPYSNLQRLWDGIQNLVNLKDIDLRFCENLVEVPDLSMATNLEDLSLSQCKSLRQVHPSILSLPKLQVLDLEGCTEIQSLQTNVHSKSLQSIRLSNCSSLKEFSVSSVELQRLWLDGTNIQELPSSIWHCAKLQFIDVQGCNDLDDFGDQLSRDPRTASFNNVVLSGCKHLNASNLHLILDSLRSLTLLELENCCNLRTLPDSIGVLSSLQRLKLGGSNVESLPASIKNLSMLRRLYLDNCMKLVSLPELPQSLWLLSAVNCTSLVTNFTQLNIPFQLKHGLEDRPQSFFLPISHVPDSFSFHAEAASVTIPHLPLSDLCGLIFCVFLSQSPPHGKYVYVDCFIYKNSEKIDGRGASLGDQNLILDHVFLWFVDTAKFGDDSLARRLQKGEACDSSNVSFEFLVEDEDGEWSTKGIKGCGIYPIYASEQKGLEVEFGDSSRDIVELELKSSNDIDELQVKGSKHDNEDDQTEKVQQVMHQRITTGLQHVKVDSDENSSCNNFIALAADGTKRKPPSFEEENYYITSTPENQIILIDNPSTSNIDSKQTIEVLEEKDLANNEVNECSDRVTSEIFHALVENDNPHLEPDWDPITELESLLFDSYKSFPMSTLSTTVSEIEVQYPNVAAILEKLDTLLETSLETICSDAEVKQQCHHVLDQLVQFQDHVPIKLHPVINKLKTFIEGVDVRFLTAQKTIQDYDQLLQSRSLLSKHLESAKARQYQINSKVSEGKIQLEKINSEIVELEQRISVLVETRDRLKSALDNCDVENNKLKNQVAKWVPKCKTVITALKESTISYKVAITNKKKDEDEWIDLKKTFAAMRFELPSIYTYFDIRS 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00802 896 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 628 - -
Cca06g00802 896 Coils Coil 787 835 - -
Cca06g00802 896 Pfam Leucine Rich Repeat 56 74 IPR011713 -
Cca06g00802 896 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 628 IPR044974 GO:0006952
Cca06g00802 896 SUPERFAMILY L domain-like 4 327 - -
Cca06g00802 896 Gene3D Ribonuclease Inhibitor 169 340 IPR032675 -
Cca06g00802 896 Gene3D Ribonuclease Inhibitor 1 168 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00802 Cca-Chr6 20941982 20948557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00802 1 296 WRKY Transcription Factor Family AT4G12020 33.553 1.55e-33 138