Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00797 ATGGCGAGATGGATGTATGGAACAGACAATTATTCACTGCCATGTGATGGGATGGTTATGGCCATGCTGGCTCACAGTGTAAGCATGTTGCTGATAAAAGTTGCCATCACTAATGGGATCAACAAGTATGTCATGGTTGCATACTCTTACTCACTCTCCACCATCATGCTTCTACCCTTTCTATTCTTTCTCCACAGGTCAAAGCGTCCTTCTCTCACACTCTCAGCACTTTGCGCCTTCTTTTTGCTTTCACTCTTTGGGAGTTCAGGAGATATGATGACTTATGCTGGCATAGAACTCAGTTCTCCTACTCTTGCTTCAGCCATGCTTAGCCTCGTTCCAGCTTTCACTTTTGTACTTGCACTCATTTTCAGGATGGAAGAAGTACATTGGACACATTATAGCAGCCAAGCTAAAGTGTTGGGAACAATAGTATCAATTGCTGGGGCATTTGTTATGATTCTTTACAAGGGCCCAACCATCTTTGCAATAGTATCAGACTCTTCTAACAAACTTCAATTTTCACCTCAACTAAACTGGGTCGTGGGAGGGATCTTCTGTGTTGGCAGTTCTTTGGTGTCTTCCATGTGGTACATCTATCAGGCTTCGGTTGCGAAGAAATACTCTAGCGTAACAGTGATAGTGTTCTTCCAACTCTTATTTTCCACCATTCTTTCTGTAGTAATTGCCTTAATAAAAGTTAGTGATCCAACGGAATGGAAGCTGAAGTTGGACATGGGGTTGATTGCCATTTTATATCAGGCAATTGGTGCAACATTGATACGTTACACCCTATGCACATGGTGCGTCCACAGAACCGGACCTCTGTTCTGTGCAATGTTCAAGCCTTTGGGAATCATCTTCACCGTTTGCATGGGAGCAATCTTTCTTGGTGATGATTTCAACCTTGGAAGTGTGATTGGCTCGGCTATAATCTCGGTAGGATTTTATGCTCTGGTCTGGGGAAAATACAAAGAGGAGAGCAATATTGAGAACTTGGGTTCATCGTCTCATAATGCTCCTTTATTACAATATGTGGCGTAA 1044 0.4282 MARWMYGTDNYSLPCDGMVMAMLAHSVSMLLIKVAITNGINKYVMVAYSYSLSTIMLLPFLFFLHRSKRPSLTLSALCAFFLLSLFGSSGDMMTYAGIELSSPTLASAMLSLVPAFTFVLALIFRMEEVHWTHYSSQAKVLGTIVSIAGAFVMILYKGPTIFAIVSDSSNKLQFSPQLNWVVGGIFCVGSSLVSSMWYIYQASVAKKYSSVTVIVFFQLLFSTILSVVIALIKVSDPTEWKLKLDMGLIAILYQAIGATLIRYTLCTWCVHRTGPLFCAMFKPLGIIFTVCMGAIFLGDDFNLGSVIGSAIISVGFYALVWGKYKEESNIENLGSSSHNAPLLQYVA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00797 347 Pfam EamA-like transporter family 183 320 IPR000620 GO:0016020|GO:0016021
Cca06g00797 347 Pfam EamA-like transporter family 18 154 IPR000620 GO:0016020|GO:0016021
Cca06g00797 347 PANTHER WAT1-RELATED PROTEIN 17 338 IPR030184 GO:0016021|GO:0022857
Cca06g00797 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 157 - -
Cca06g00797 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 325 - -
Cca06g00797 347 PANTHER WAT1-RELATED PROTEIN 17 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00797 Cca-Chr6 20834507 20837336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00797 4 346 Nodulin-like Gene Family AT5G40240 39.886 8.25e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00797 - - ccaj:109800829 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00797 06 20834507 20837336 Cca06g00797 06 20834507 20837336 ECH
Cca06g00797 06 20834507 20837336 Cca11g01868 11 43835006 43837491 ECH