Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00778 ATGTCGGTCTCCTGCTCCAACTGCTTCCCCGACTCCTTCCTCCTCTGCGGCGAGGATTCCTCCGAAATCTTATCCGGCGACTCGCCGGAGTGTTCCTCCGACCTCGATTCATCGCCGCCGGAGGAGGAGGAGTCCATAGCTGGATTCATCGAAGACGAGCGCAACTTCGTTCCCGGATTCGACTACCTCAGCAGGTTCCAGTCTCGCTCTCTCGACGCCTCCGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTCAGCCGCTCACCGCTTATCTTTCCGTTAACTATATGGATCGGTTCTTGAATTCTCGGCCGTTGCCGCAAACCAATGGGTGGCCACTGCAGCTTCTATCAGTCGCGTGTTTGTCGTTAGCGGCAAAGATGGAGGAACCTCTAGTTCCGTCTCTTTTGGACCTTCAGGTAGAGGGTGCCAAATACTTATTTGAGCCCAGAACAATTAGAAGGATGGAGCTACTTGTCCTTGGTGTCTTGGATTGGAGGCTAAGATCGGTTACCCCATTTAGCTTCCTCGGTTTCTTTGCGTGCAAGTTAGATTCAACTGGAACTTTTACTGGGTTCCTCATTTCACGGGCTACACAAATTATCTTATCCAATATCCAAGAGGCAAGCTTTCTTGCCTATTGGCCATCATGCATTGCTGCCGCGGCCATTCTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGGCCAGAGCATGCTGAGTCGTGGTGCGAGGGGCTAAGAAAGGAGAAAATTATAGGGTGCTACCAATTATTGCAAGAACTTGTGATTGACAATAACCAGAGGAAACCCCCTAAGGTGCTACCACAGCTGCGTGTGACATCTCGGCCCCCTATGAGGTCTAGTGTCTCGTCATTCTCAGcatcctcatcctcttctccttcatcctcatTGTCTTGTAAAAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGATGACAAGGGAAACTCCCGGTGA 1008 0.4861 MSVSCSNCFPDSFLLCGEDSSEILSGDSPECSSDLDSSPPEEEESIAGFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRPLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYLFEPRTIRRMELLVLGVLDWRLRSVTPFSFLGFFACKLDSTGTFTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEHAESWCEGLRKEKIIGCYQLLQELVIDNNQRKPPKVLPQLRVTSRPPMRSSVSSFSASSSSSPSSSLSCKRRKLNNCLWVDDDKGNSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00778 335 CDD CYCLIN 82 168 IPR013763 -
Cca06g00778 335 Gene3D - 59 176 - -
Cca06g00778 335 SUPERFAMILY Cyclin-like 160 279 IPR036915 -
Cca06g00778 335 MobiDBLite consensus disorder prediction 25 44 - -
Cca06g00778 335 MobiDBLite consensus disorder prediction 286 315 - -
Cca06g00778 335 Pfam Cyclin, N-terminal domain 48 175 IPR006671 -
Cca06g00778 335 SUPERFAMILY Cyclin-like 37 175 IPR036915 -
Cca06g00778 335 MobiDBLite consensus disorder prediction 291 315 - -
Cca06g00778 335 PANTHER CYCLINS 1 325 IPR039361 -
Cca06g00778 335 SMART cyclin_7 81 169 IPR013763 -
Cca06g00778 335 Pfam Cyclin, C-terminal domain 178 288 IPR004367 -
Cca06g00778 335 SMART Cyclin_C_2 178 305 IPR004367 -
Cca06g00778 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Cca06g00778 335 Gene3D - 50 239 - -
Cca06g00778 335 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00778 Cca-Chr6 20574982 20578670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00778 1 334 Core Cell Cycle Gene Families AT1G70210 64.793 3.97e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00778 K18810 - gmx:100775224 553.132