Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00771 ATGGAAAAGGATATCTGTGATCTTTCTCCAACATGGGATGGTGATAATGCCAACTCTACTGAGAAAAGGCTTAGGTTATTTGGCTTTGAGCTAAACCCTTCTAAAGAGGGTAGTGCCAAGGAGTCTGGTGAAGGAGATGAAAGTGTGAACTCCTCTAATTCAGTCTCATCAGGAGGAGAGAAAACTGTGCAAGAGAAAACCTCAGCCAAAGACCCTGATGAGAAAAAGTTTGAGTGCCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCACTAGGAGGCCACCAAAATGCTCACAAGAAAGAAAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCCATAAACCGTTACTTGCAACACCCTTTCCAAACCAACCATGGCTTTGCTTACCAACCCTCTGATACTCCTTGGTTCTATGATCCCTCTACCTATAACTCTGAGTTCACCCTTTGTGAAGAACCTCAGATTAGCTTCAATTCAAATGCTATAGATACCAACTTTTCTTGTGATCAGAAATCTAGTTGGTATCCTATAGCATCCCACTTTCCTTCACAGCAAGATACTTGCATGTTCACTTTCTCCAATTCAAATAACAATAATAATAGTCCTTTCTTCTTCAAGCCTTGCCACTTCCCTACTTCAAACCAAGGCCATAGTAAAGCCTTAGATCTTCAACTAGGCCTCAACTTGCAGTCAAATACAAGTTCTCTAAGAAGGATGTAA 723 0.4053 MEKDICDLSPTWDGDNANSTEKRLRLFGFELNPSKEGSAKESGEGDESVNSSNSVSSGGEKTVQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQTNHGFAYQPSDTPWFYDPSTYNSEFTLCEEPQISFNSNAIDTNFSCDQKSSWYPIASHFPSQQDTCMFTFSNSNNNNNSPFFFKPCHFPTSNQGHSKALDLQLGLNLQSNTSSLRRM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00771 240 Gene3D Classic Zinc Finger 51 127 - -
Cca06g00771 240 MobiDBLite consensus disorder prediction 29 71 - -
Cca06g00771 240 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Cca06g00771 240 PANTHER ZINC FINGER PROTEIN 5 17 231 - -
Cca06g00771 240 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Cca06g00771 240 MobiDBLite consensus disorder prediction 44 63 - -
Cca06g00771 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Cca06g00771 240 PANTHER ZINC FINGER PROTEIN 5 17 231 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00771 Cca-Chr6 20375950 20377253 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00771 11 113 C2H2 Transcription Factor Family AT5G06650 41.509 2.47e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00771 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00771 - - gmx:100527006 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00771 06 20375950 20377253 Cca06g00771 06 20375950 20377253 ECH