Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00767 ATGAGTTCATCCTCAGAGAAGAAACCATCCTCTTCTTCAGTGCTGAAGCTATTTGGTTTCCCTCTAACGTCCCCAACGGACAACAATGTTCGAAGAAAGAAGTGTCCATTCTGCCATCGTGAATTTCAGAATTTGCAAGCGTTAGGGGGCCACCAAAATGCGCATAGAAGAGAAAGACAAATGGCTAGGTTGGCCCAAATTGAATATGTGTATTTACATCAAACAAACCAAACATTCGACGCAGTTACACCTCCTCTAGTTGCACAAAAAGCATCATCAGCCTCTAGTTTTGGTGGTGCAACTCGATTCTGGACAGCACCTGAGTCATCGCAAATGCTACCTGTTGTGGAGCCACCAGGTATGCACTACCTAGTAGTAGGGGTTGATGGGGTTGATGAGGATAATATTGATCTGGAACTAAGGCTAGCAACCTCTTCTAAAGAATCTGGGATGTGA 456 0.4452 MSSSSEKKPSSSSVLKLFGFPLTSPTDNNVRRKKCPFCHREFQNLQALGGHQNAHRRERQMARLAQIEYVYLHQTNQTFDAVTPPLVAQKASSASSFGGATRFWTAPESSQMLPVVEPPGMHYLVVGVDGVDEDNIDLELRLATSSKESGM 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00767 151 Pfam C2H2-type zinc finger 34 58 - -
Cca06g00767 151 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Cca06g00767 151 PANTHER ZINC FINGER PROTEIN 5 2 95 IPR044299 GO:0010090
Cca06g00767 151 PANTHER ZINC FINGER PROTEIN 6-LIKE 2 95 - -
Cca06g00767 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Cca06g00767 151 SUPERFAMILY beta-beta-alpha zinc fingers 33 61 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00767 Cca-Chr6 20297477 20297932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00767 26 110 C2H2 Transcription Factor Family AT3G58070 40.449 2.68e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00767 - - ccaj:109793205 300.056