Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00762 ATGGACACCAACGGCGTCGTTTCCTTTGATGTCTCGCCGGAGGATTCCCACGAGGTTCACGTTTTGGCCGTCGACGACAGCCTCGTTGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGTTACGGCTGTGGATAGTGGAATCAGAGCACTGCAATTCCTGGGGTTGGACGAACAGAGAAGGGCCTCTGAATCTGATAGTTTTGTCCCGAGTTTGAAGGTGGATCTAATTATCACAGACTATTGCATGCCCGAAATGACCGGTTATGAGTTGTTAAAGAAAATCAAGGAATCAACCACGTTCAGAGAAATCCCGGTAGTGATTATGTCTTCTGAAAACATTTTGCCGCGCATAGACAGATGCTTAGAGGAAGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCCGACGTGAAACGGTTAAAGGGTTACATGACACCGAGAGAGGTTAGAGAGCGAAGCCAAGAGAGAACAAGTGTTGAGGGGAGTGGTGGTGGTGTGGAGATCAACAACAAAAGAAAGCTGGAAGAGCAAGAAATCTCCGACGTGTCATCATCACCGCCGTCCATTTCTACGCTTTCATCATCACCGTCTGATTCTtcgccgtcgccgtcgccgtcatcttctcccacgtcttcgccCAGCGTACTCGCGTCTCCAATCAGACGGCTCAAAATGAGCAGCAGCACCACCGATTGA 714 0.451 MDTNGVVSFDVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRRASESDSFVPSLKVDLIITDYCMPEMTGYELLKKIKESTTFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTPREVRERSQERTSVEGSGGGVEINNKRKLEEQEISDVSSSPPSISTLSSSPSDSSPSPSPSSSPTSSPSVLASPIRRLKMSSSTTD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00762 237 MobiDBLite consensus disorder prediction 215 237 - -
Cca06g00762 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 233 IPR045279 GO:0009736
Cca06g00762 237 MobiDBLite consensus disorder prediction 186 207 - -
Cca06g00762 237 SMART REC_2 19 150 IPR001789 GO:0000160
Cca06g00762 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 8 233 - -
Cca06g00762 237 Pfam Response regulator receiver domain 21 143 IPR001789 GO:0000160
Cca06g00762 237 SUPERFAMILY CheY-like 19 146 IPR011006 -
Cca06g00762 237 MobiDBLite consensus disorder prediction 151 237 - -
Cca06g00762 237 CDD REC_typeA_ARR 21 146 - -
Cca06g00762 237 Gene3D - 19 198 - -
Cca06g00762 237 ProSiteProfiles Response regulatory domain profile. 20 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00762 Cca-Chr6 20230373 20231766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00762 5 227 Response Regulator Gene Family AT1G59940 58.150 2.04e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g00762 Response_reg 1.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00762 K14492 - gmx:100787696 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00762 06 20230373 20231766 Cca06g00762 06 20230373 20231766 ECH