Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00756 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTTCACGAGGAGAAGCGTCCGGGCAACCGCAGATGACGAATGGAGGTTCTCAGAAACTGACAACTAATGATGCCCTTGCATATCTGAAGGCTGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCGGGTGTCATTGCAAGAGTAAAGGAACTATTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTATGAAATCACACTTGCATCGGAGGATGAACAACCTGCCCCAAAGAAACCTGTTGAATTTGAAGAAGCCATTAGTTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCATGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGACGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCATCCACTCATTATGTTTCTGCTCGAAATTCTATGCTTCGTGATAGGACCTCTGCAATGCCAACAGTACGGCAAATGCATGTTGAAAAGCGAGAAAGGACCATTGTTTCACATGGTGATCGTGACCCCAGTGTTGATCGTCCTGACCCAGATCATGACAGAGGTTTGTTAAGGGTAGAAAAGGAGCATAGGAGACGTATGGACAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGATAGAGATTATGAGCATGATGGGGGACGAGATAGGGAGAGATTCACTCACAAACGGAATCGTAAGGCTGAAGACTCAGGAGCTGAACCTTTGCTTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTCGCTTTCTGTGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATAACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGGTACAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCTTTATGGAATGATGGACATGGACTGAAACAGATGAAGGTTGAAGACAGGGACAGAGATCGGGATCGAGATCGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGATCGTGAGTTCCGAGAAAGGGACAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTCCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTCTCTAACTGTGACCAGTGCACTCCTAGTTACCGCCTCTTACCAAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTTTCTGTCACTTCGGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTTGAAGAGCTATTAGATAAGATCAATAATAATACAATTAAAGGAGACAGCCCAATTCGTATTGAGGAACACTTAACAGCTATAAATCTTAGGTGTGTTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCGGCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACGAAAAGCTTGAGCACCAAAGCCTTGTTGGCAGAAATCAAAGAAATTAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTTCAAATTTGGAGTTTAAGTATTCAGATCCAGATATTCACGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACCGAACAGGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCTTGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTAAAGGCTAAGAATAATTATGTCAAAAATGGCATTGCAAGTGTTGCTGAAAGTGATGGTAGCCCTGTTGTTGGTGCTACCATAATGAATCCAAAGCTTATAAATGTTTCCAGAAATGGGGATGAGTGTATGCCATTAGATCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGAATAGGTATCTTGATGACCGTGCATTGCGTAAAACTGAAGCTTTAAGCAGTAATACTCAGCATGGTAAAATGAATAGTATTGCATTCACACCTGATGAACTATCAGGATTTAATAATAAGCAAGACCAGCCTGGTGAGCGGTTAGTGAATGCTAATGTGTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACAAAGATAATTTGTCAGGACTCACTGCCACTCCATCTAGACCTGGTAATGTTTCTGTTGAGGGAGGACTTGATATGCCGTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATGCACAAATGGGGCCATCACTGGAGGCACCAAAGTTCATCGATACCAAGAGGAATCAGTTCGACCCTTCAAAGGTGAAAGAGAAGAGGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACAGGGAGGAAGTTTGTGGTGAAACCAGAGGAGAAAATGATGCTGATGCAGATGATGAAGGTGAAGAAAGCCCTCACAGATCATCAGAGGACAGTGAAAATGCATCTGAAAATGCTGATGTTTCTGGAAGCGAGTCCGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCACGACGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCCCATGATGTTGAAGGTGATGGAATGCCATTGCCATATTCTGAACGCTTTCTACTAACCGTGAAACCTCTAGCAAAGCATGTACCTCCAATGTTGCTTGAGAAGGACAGGAATTCACAAGTTTTCTATGGAAATGATTCCTTCTATGTGTTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACTGATCAATATGACAGGTTCATGAATTCCCTCTACAATTTGCTGGATGGTTCTTCTGATAACACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAACTCAATCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAATAAGCTTCTACAATTATATGCATATGAGAAATCGAGAAAACCAGGAAAATTTGTCGATATAGTTTATCATGAAAACTCCCGTGTTCTTCTCCATGAGGACAACATATATCGTATTGAATATACACCTGGACCAATGAAACTGTCTATTCAGCTGATGGACTCTGGGCATGACAAACCCGAAGTGACTGCTGTGTCAGTGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTGTCTGTTGTCCCTGAGAAAAAGGAGAAATCAGGAATTTTCTTGAAGAGGAATAAACGTAAATATGCCAGTAATGATGAATTCTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAATGCAAGATAGCTTGCAGTTCTTCTAAGGTCTCATACGTTTTAGATACCGAAGACTTCTTGTTTCGGAAGAGAAGGAAAAGAAGACGCTTGCATCCGAAGAGCTCAGGCCATGAACAGGCACAGTCTTCAAACATTTGTTCAAGCAGATTACAACGATTCCGCAAGTTGTTTCCCATTACATGA 4218 0.4092 MKRSRDEVFTSCSQLKRPVVSSRGEASGQPQMTNGGSQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLASEDEQPAPKKPVEFEEAISFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAAIFQDHPDLLDEFTHFLPDASAAASTHYVSARNSMLRDRTSAMPTVRQMHVEKRERTIVSHGDRDPSVDRPDPDHDRGLLRVEKEHRRRMDKERREDRDKRERERDDRDYEHDGGRDRERFTHKRNRKAEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLVQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKVEDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGPKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDSPIRIEEHLTAINLRCVERLYGDHGLDVMEVLRKNAALALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILSNLEFKYSDPDIHEDLYQLIKYSCGEICTTEQVDKVMKVWTTFLEPLLCVPSRPQGAEDTEDVVKAKNNYVKNGIASVAESDGSPVVGATIMNPKLINVSRNGDECMPLDQSTSSKAWQSNGDSGVRENRYLDDRALRKTEALSSNTQHGKMNSIAFTPDELSGFNNKQDQPGERLVNANVSPASGMEQSNGRTNKDNLSGLTATPSRPGNVSVEGGLDMPSSEGGDSTRPGTCTNGAITGGTKVHRYQEESVRPFKGEREEVHKGKDGGVSRQYQNRHREEVCGETRGENDADADDEGEESPHRSSEDSENASENADVSGSESADGEECSREEHDDGEHDNKAESEGEAEGIADAHDVEGDGMPLPYSERFLLTVKPLAKHVPPMLLEKDRNSQVFYGNDSFYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNSLYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGKFVDIVYHENSRVLLHEDNIYRIEYTPGPMKLSIQLMDSGHDKPEVTAVSVDPNFSTYLHNDFLSVVPEKKEKSGIFLKRNKRKYASNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRKRRKRRRLHPKSSGHEQAQSSNICSSRLQRFRKLFPIT 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00756 1405 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 468 1376 - -
Cca06g00756 1405 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 5 434 - -
Cca06g00756 1405 MobiDBLite consensus disorder prediction 969 1012 - -
Cca06g00756 1405 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Cca06g00756 1405 Gene3D Paired amphipathic helix 331 403 IPR036600 GO:0006355
Cca06g00756 1405 SMART hdac_interact2seq4b 497 597 IPR013194 -
Cca06g00756 1405 Pfam C-terminal domain of Sin3a protein 1119 1365 IPR031693 -
Cca06g00756 1405 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 222 309 - -
Cca06g00756 1405 MobiDBLite consensus disorder prediction 1020 1034 - -
Cca06g00756 1405 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Cca06g00756 1405 ProSiteProfiles PAH domain profile. 333 402 IPR003822 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 831 848 - -
Cca06g00756 1405 PANTHER SIN3B-RELATED 5 434 IPR039774 GO:0003714
Cca06g00756 1405 PANTHER SIN3B-RELATED 468 1376 IPR039774 GO:0003714
Cca06g00756 1405 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Cca06g00756 1405 Pfam Sin3 family co-repressor 500 591 IPR013194 -
Cca06g00756 1405 SUPERFAMILY PAH2 domain 331 399 IPR036600 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 18 39 - -
Cca06g00756 1405 SUPERFAMILY PAH2 domain 37 107 IPR036600 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 216 331 - -
Cca06g00756 1405 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 948 964 - -
Cca06g00756 1405 MobiDBLite consensus disorder prediction 831 1072 - -
Cca06g00756 1405 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Cca06g00756 1405 Pfam Paired amphipathic helix repeat 355 399 IPR003822 GO:0006355
Cca06g00756 1405 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Cca06g00756 1405 MobiDBLite consensus disorder prediction 1047 1072 - -
Cca06g00756 1405 MobiDBLite consensus disorder prediction 431 459 - -
Cca06g00756 1405 MobiDBLite consensus disorder prediction 863 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00756 Cca-Chr6 20139580 20153385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00756 29 120 WRKY Transcription Factor Family AT4G12020 58.511 5.71e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g00756 Sin3a_C 4.5e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00756 K11644 - gmx:100811928 2463.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00756 06 20139580 20153385 Cca06g00756 06 20139580 20153385 ECH