Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00751 ATGTCTCGCACGTGCTCACACTGCGGCAACAACGGCCACAACTCCCGGACATGCACCGACGGCGGCGCCGCCTCTCCCAGGGAGAACGGCTTCATGCTCTTCGGCGTGCGACTCACCGAACCTAGCTCCTCCTTCAGGAAGAGCGCCAGCATGAACAACCTCTCCCAGTacgaccacgactccaacgccgccgacgccggctacgcctccgacgacgtcgTTCACGCCTCCGCACGCACGCGCGACCGCAAGCGAGGTGTCCCTTGGACGGAGGAAGAGCACAGGTTGTTCCTGTTAGGGTTGCACAAAGTCGGAAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGAACGCCCACTCAGGTTGCTAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAATCAGAACCGCCGTCGCCGGAGATCTAGCCTTTTCGACATCACCACCGATACAGTTATGGAGTCTTCTACTATAATGGAAGAAGAGCAAGTTCAGCAAGAAACAGCGGCGGCGCCTATCCCCGCCGCATATCCGCCGTCGCATTACGGTGGTTTCCCCGGCGCGGTTTTTCCGATGAGTTTGGCTCCGGTGAGTGGTGAGAGAGTAGCGAAGCCGATCAGGCCGACGCCGATTTTGCCGGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACCTGAAAGAGAAAGCTTCTCCGGCGGCGGCGTTGTCGAGTCAGGAGCAGTCGGCGGGGGCTTTTGAGGCGATTTCTGGAGGGAAGTTCGGCGGTGGTGGGGATAGCATCATCAGTGTTGCTTGA 807 0.539 MSRTCSHCGNNGHNSRTCTDGGAASPRENGFMLFGVRLTEPSSSFRKSASMNNLSQYDHDSNAADAGYASDDVVHASARTRDRKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAAAPIPAAYPPSHYGGFPGAVFPMSLAPVSGERVAKPIRPTPILPVPPSSKMANLNLKEKASPAAALSSQEQSAGAFEAISGGKFGGGGDSIISVA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00751 268 CDD SANT 88 133 IPR001005 -
Cca06g00751 268 SUPERFAMILY Homeodomain-like 83 136 IPR009057 -
Cca06g00751 268 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Cca06g00751 268 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 5 236 - -
Cca06g00751 268 Gene3D - 87 138 - -
Cca06g00751 268 ProSiteProfiles Myb-like domain profile. 81 133 IPR001005 -
Cca06g00751 268 SMART sant 85 135 IPR001005 -
Cca06g00751 268 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Cca06g00751 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 137 IPR017930 -
Cca06g00751 268 ProSiteProfiles SANT domain profile. 84 137 IPR017884 -
Cca06g00751 268 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g00751 268 PANTHER TRANSCRIPTION FACTOR KUA1 5 236 - -
Cca06g00751 268 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 84 135 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00751 Cca-Chr6 20084204 20085987 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g00751 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00751 - - ccaj:109800877 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00751 06 20084204 20085987 Cca06g00751 06 20084204 20085987 ECH
Cca06g00751 06 20084204 20085987 Cca06g00751 06 20084204 20085987 PCT