Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00749 ATGCCGTCTCACGCGGATCTGGATCGGCAGATCGAGCACCTCATGGAGTGCAAGCCTTTGCCGGAGGCCGAGGTGAAGTCGCTGTGCGATCAGGCAAGGGCGATTCTCGTCGAAGAGTGGAACGTTCAGCCGGTCAAGTGTCCGGTCACCGTCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTTTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGCTACTATTCGGTAGAGACTGTTTCACTTTTGGTGGCCTTGAAAGTCCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGTCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAGTGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATCTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGGGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCGATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGGCTCTCGCTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGGTACAATTGGTGCCAGGTGAGCATCTGA 759 0.4875 MPSHADLDRQIEHLMECKPLPEAEVKSLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQVSI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00749 252 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 249 - -
Cca06g00749 252 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Cca06g00749 252 CDD MPP_PP2A_PP4_PP6 6 249 - -
Cca06g00749 252 SUPERFAMILY Metallo-dependent phosphatases 6 249 IPR029052 -
Cca06g00749 252 SMART pp2a_7 20 252 IPR006186 GO:0016787
Cca06g00749 252 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Cca06g00749 252 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 249 - -
Cca06g00749 252 Gene3D - 2 251 IPR029052 -
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Cca06g00749 252 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00749 Cca-Chr6 20050253 20054764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00749 20 225 Calmodulin-binding Proteins AT5G63870 35.081 1.66e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00749 K04382 - gmx:100794029 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00749 06 20050253 20054764 Cca06g00749 06 20050253 20054764 ECH
Cca06g00749 06 20050253 20054764 Cca06g00749 06 20050253 20054764 PCT