Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00747 ATGACGCCGGAAACTCACGTCACTCCTCCTCCACCGTCCTTCAGGCTCCGCTGTGACGTCTTCCTCAGCTTCCGCAGATACGACACGTGCCACACCTTCACCATCAACCTCCAACGAGCGCTCCTCGGCCTCGGCCTCGGCCTCCGCGTCTTCCCTGACGACCATGGCCTCGAGCGCGGCGGCGATATCCAGAAGAACCTTCTGGCGGCCATCGAAGACTCTGCGGCCTGCGTGGTGGTTCTCTCTCCCGATTACGCGTCCTCGCACTGGTGCCTGGAAGAACTGGCCAAGATTTGCGAGGTTGAGAGGCTCGTCCTTCCCGTATTCTACTGCGTCGACCCTTCGGATGTCAGAAAGCAGAAGGGTCGTTCCTTCGAGGGAGCTTTCGCGTCCCATGCAGAGAGGTTTTCCCAAGAGAGTGTTCAGCAGTGGAGGGATGCCATGAAAAAAGTGGGAGGAATCGCTGGTTATGTTGTTGATGAACAAAGTGACAAGATTGATAACCTCATTCAGATTTTGGTGCAAACGCTTCTGAAGCAGATGAGAAATACACCTCTGAATGTGGCTCCGTACACAGTTGGGCTAGAAGAAAGAGTCgaagaactgaaaaggctgttagacgtaaaatccaacgatgtaagagttctggggttgtacggcatgggtggggttggtaaaacaacccttgccaagaccctcttcaacaccctcgtcgttcacaatttcgagcgtcgcagtttcatcccaaatgttagaTCACAAGTCTCCAAACACGGTGGTTTGGTTTCTCTCCAAAACACACTTCGCAGTGATCTTTCCCAGAGTGGAAAAGACTCAAAAGAGGGTCTCATAAATGATGTAAACGATGGCATTGCTGCTATCAAAAGAATAGTGCAAGAGAATCGAGTTTTGTTGATCTTAGATGACGTGGATGATGTGGAGCATCTTAACTTTTTGATGGGTAAGAGGGAATGGTTTCACAAAGGAAGCCGAGTTGTGATAACCACAAGGGACAAAGAAGTTTTACGTGAGAGTTATGTGGACATGCACTATGAGGTGAAGGAGTTGAAATTCTCAGCAGCACTAGAACTATTTTGTTACCATGCAATGAGAAGAAAGGAACCTGCAGAGGGTTTTTTGGATCTTGCAAACCAAATTGTGGAGAAGACTCAAGGGTTGCCCTTGGCCTTGGAAGTTTTTGGTTCTTTTCTGTTTGACAAGAGGACGGAGAGGGAATGGAAAGATGCAGTGGAGAAGGTGAAGCAGATTCGACCAGCGTGTCTTCATGATGTGCTGAAGATAAGCTTTGATGCGTTGGATGAAGAAGAGAAGTGTGTGTTCCTTGACATGGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGAGAGGATGTGGTTGATGTGTTGAATGGGTGTGGTTTTAGTGGGGAGATAGCAGTCACTCTGCTTACAGCAAGGTGTTTGATTAAGATCAGTGGTGATGGTAACGTGTGGATGCATGATCAAGTTAGAGACATGGGGAGGCAGATTGTGGTTAGTGAAAACCTTGCAGATGCTGGTCTACGTAGCAGGCTTTGGGATCGTGGTGAAATCTTGACCGTGTTGAAGAGTATGAAGGGAACCAGAAATGTTCGAGGGATTGTCTTAGATTGTGTAAAGAGAAGAATGTCTATTCCTGAAGATCGCTCTGCTGATAAAATAACTTGGGAAAACTTTAGACATAAGCCCAGTTGTAAATCTGCATTAGAATATATCAAAGAGAGGCATAAAAAGTACGTGCGGGATAGAGAAGAGAAAGGAAAAGAGGTTATCCTTCAGTCCAAGCACTTTCAACCAATGGTATCCTTAAGACTGCTTCAAATTAATTATTCAAGATTGGAAGGACAATTCAGATGTCTTCCTCCAGGACTCAAGTGGTTACAATGGAAACAATGTCCATTAAGGTATATGCCTTCTACCTATAATCCTTTGGAACTTGCTGTCATGGATCTCTCGGAAAGTCAGATTGAAACGGTGTGGGGCAGACGCAGTAACAAGGTGGCTGAGCACTTGATGGTTTTAAACCTCTCCAGTTGCCACCGTTTGACAGAAACTCCTGATTTAACTGGTTATCTATCTCTTAAAAAAATTATTTTGGAAGAATGCTCTCATTTAACTAGGATTCATGAATCACTTGGAGATCTATGTTCCTTAGTTCACTTGAACTTGCGCCTCTGCTATAACCTTATGGAACTACCTGGTGATGTCTCTGGGCTGAAACATCTCGAGGACCTTATTCTTTCCGACTGCTGGAAATTGAAAGCATTACCGGAAGACTTAAGCTGCATGGTTTCTTTGAGACAACTTCTTCTTGATAACACTGCTATAACTGAGCTACCCGAGTCCATCTTCCACATGACAAAACTTGAAAAGCTAAGCACAAATGGATGCCGCTCTCTGAAGAGGTTACCTACCTGCATTGGGCAACTCTGCTCCCTGCAAGAATTGTCACTCAACCATACAGTATTGGAGGAGTTGCCAGATTCTGTTGGTTCTTTGAAAAAACTTGAGAAGCTTAGTTTGATGGGATGTAGATCACTCTCAGTGATTCCTAACTCCATTGGAAAACTTATTGCATTGGCTCAATTGTTTTTGAACGGGAGTGGAATTAAAGAATTGCCTGCTTCTATTGATTCTTTATCATATTTAAGGAAACTGTCTGTTGGAGGCTGTAATATTCTTGACAAATTGCCTGTGTCAATAGAGGCTTTAGTTTCTTTGGTTGAGCTTCAGTTAGATAGGACAAAAATTACCAATTTTCCTGATCAAATGTTTGCGGCCATGCAAATGCTGGAAAAGCTTGAGATGGGAAAATGTCAGCATCTCAGGATTCTACCAGTATCATTTGGCTGCCTGTCAGCTCTTACCAGTTTGGACCTGCATGAGACAAACATTATTGAATTGCCAGAATCAACAAAAATGTTGGAAAATCTTATTCGGTTGAGGTTAGACATGTGCAAACAGCTTCAAAGGCTTCCAGACACCATTGGAAATTTGAAATCTTTGCGATGGTTATCGATGAAGGAAACAGCACTTACACATCTACCTGATAGCTTTGGGATGCTTACAAGCCTGGTAAAACTAGACATGGAAAGAAGGCCCTATCTTAATGGGGCTAGAAACAACATGCCTACCGGGGTCATAATTCCTAACAAACACGAAGAACCTAATTCAGAGGCAATATTAACTTCTTTTTGCAATCTAACCTTGCTGGAAGAGCTAAATGGTCATGGATGGGGAATATATGGAAAAATTCCAGATGACTTTGAAAAGCTATCATCACTGGAAATTTTAAGCTTAGGCCACAACAATATTTGCAGTCTTCCAGCCAGCATGACAGGTCTCTCCTATCTCAAAAAACTTTTGTTGTCAGATTGCAGGGAGCTCATGTTTCTGCCTCCTCTTCCCTCTAGCCTAGAAGAGCTTCATCTTGCAAACTGTACTGCAGTACAGTACATATATGATATTTCAAACTTGGGGCGCTTAGAGGAGTTGAACCTTACGAATTGTGAAAAGGTGATGGATATCCCAGGTCTTGAGCATTTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGCATTGGATGTTCCCTAGCCGTAAAGAGGAGATTTTCCAAGGTTCTACTTAAAAAATTAGAGATTTTGATTATGCCTGGAAGCAGAGTCCCGGATTGGTTTACAGCAGAACCAGTTGTCTTTTCCAAGCGAAGAAACCGTGAGCTTAAAAGTGTTATTTGTTTTGGTGTTCTCTCTTTCAATAATATACCTGAAAACCAAAGAGAAGGACTGGAGTTAGTGGATGTTCAAGGAAAAATCTTCAATTTGACTGATAATGTATATAGCACAACGTTTCGCTTACTAGGATTACCCAGGACAAATCAAGACCACATATTTTTGCGCAGATTTGGAGTTCGGTCTCCGTTAGTTTTTCAGTTAAAAGATAAATATATCTTACATTTGAAAAAGCGAAACCCACCTTTTATTGAGGGGCTGGAGCTGAAGAACTGTAGAATTCAATTGGTTTTTGAAGACGATGATGACTATGAGGGAGACGAAGGATCACTAGATGAAAGTCAATACTCTGTTTCACAAAAATTAGCCAAGTTCTTCAACTTTGTTTCAGATGACCCATGTGTGTGA 4176 0.4128 MTPETHVTPPPPSFRLRCDVFLSFRRYDTCHTFTINLQRALLGLGLGLRVFPDDHGLERGGDIQKNLLAAIEDSAACVVVLSPDYASSHWCLEELAKICEVERLVLPVFYCVDPSDVRKQKGRSFEGAFASHAERFSQESVQQWRDAMKKVGGIAGYVVDEQSDKIDNLIQILVQTLLKQMRNTPLNVAPYTVGLEERVEELKRLLDVKSNDVRVLGLYGMGGVGKTTLAKTLFNTLVVHNFERRSFIPNVRSQVSKHGGLVSLQNTLRSDLSQSGKDSKEGLINDVNDGIAAIKRIVQENRVLLILDDVDDVEHLNFLMGKREWFHKGSRVVITTRDKEVLRESYVDMHYEVKELKFSAALELFCYHAMRRKEPAEGFLDLANQIVEKTQGLPLALEVFGSFLFDKRTEREWKDAVEKVKQIRPACLHDVLKISFDALDEEEKCVFLDMACLFVQMEMKREDVVDVLNGCGFSGEIAVTLLTARCLIKISGDGNVWMHDQVRDMGRQIVVSENLADAGLRSRLWDRGEILTVLKSMKGTRNVRGIVLDCVKRRMSIPEDRSADKITWENFRHKPSCKSALEYIKERHKKYVRDREEKGKEVILQSKHFQPMVSLRLLQINYSRLEGQFRCLPPGLKWLQWKQCPLRYMPSTYNPLELAVMDLSESQIETVWGRRSNKVAEHLMVLNLSSCHRLTETPDLTGYLSLKKIILEECSHLTRIHESLGDLCSLVHLNLRLCYNLMELPGDVSGLKHLEDLILSDCWKLKALPEDLSCMVSLRQLLLDNTAITELPESIFHMTKLEKLSTNGCRSLKRLPTCIGQLCSLQELSLNHTVLEELPDSVGSLKKLEKLSLMGCRSLSVIPNSIGKLIALAQLFLNGSGIKELPASIDSLSYLRKLSVGGCNILDKLPVSIEALVSLVELQLDRTKITNFPDQMFAAMQMLEKLEMGKCQHLRILPVSFGCLSALTSLDLHETNIIELPESTKMLENLIRLRLDMCKQLQRLPDTIGNLKSLRWLSMKETALTHLPDSFGMLTSLVKLDMERRPYLNGARNNMPTGVIIPNKHEEPNSEAILTSFCNLTLLEELNGHGWGIYGKIPDDFEKLSSLEILSLGHNNICSLPASMTGLSYLKKLLLSDCRELMFLPPLPSSLEELHLANCTAVQYIYDISNLGRLEELNLTNCEKVMDIPGLEHLKSLRRLYMSGCIGCSLAVKRRFSKVLLKKLEILIMPGSRVPDWFTAEPVVFSKRRNRELKSVICFGVLSFNNIPENQREGLELVDVQGKIFNLTDNVYSTTFRLLGLPRTNQDHIFLRRFGVRSPLVFQLKDKYILHLKKRNPPFIEGLELKNCRIQLVFEDDDDYEGDEGSLDESQYSVSQKLAKFFNFVSDDPCV 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00747 1391 Gene3D Ribonuclease Inhibitor 600 857 IPR032675 -
Cca06g00747 1391 PRINTS Disease resistance protein signature 297 311 - -
Cca06g00747 1391 PRINTS Disease resistance protein signature 390 404 - -
Cca06g00747 1391 PRINTS Disease resistance protein signature 215 230 - -
Cca06g00747 1391 PRINTS Disease resistance protein signature 843 859 - -
Cca06g00747 1391 SMART till_3 17 154 IPR000157 GO:0007165
Cca06g00747 1391 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 157 IPR035897 -
Cca06g00747 1391 Pfam TIR domain 19 177 IPR000157 GO:0007165
Cca06g00747 1391 Gene3D - 356 446 IPR042197 -
Cca06g00747 1391 Gene3D - 181 350 IPR027417 -
Cca06g00747 1391 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Cca06g00747 1391 Pfam Leucine rich repeat 918 977 IPR001611 GO:0005515
Cca06g00747 1391 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1344 IPR044974 GO:0006952
Cca06g00747 1391 ProSiteProfiles Leucine-rich repeat profile. 1106 1127 IPR001611 GO:0005515
Cca06g00747 1391 SUPERFAMILY L domain-like 915 1233 - -
Cca06g00747 1391 Gene3D - 14 180 IPR035897 -
Cca06g00747 1391 SMART LRR_typ_2 1011 1033 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 964 986 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 1104 1127 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 775 798 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 869 892 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 916 939 IPR003591 -
Cca06g00747 1391 SMART LRR_typ_2 822 845 IPR003591 -
Cca06g00747 1391 SUPERFAMILY L domain-like 498 952 - -
Cca06g00747 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 449 IPR027417 -
Cca06g00747 1391 Gene3D Ribonuclease Inhibitor 858 1057 IPR032675 -
Cca06g00747 1391 Gene3D Ribonuclease Inhibitor 1063 1211 IPR032675 -
Cca06g00747 1391 Pfam NB-ARC domain 196 422 IPR002182 GO:0043531
Cca06g00747 1391 PANTHER TMV RESISTANCE PROTEIN N-LIKE 15 1344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00747 Cca-Chr6 19994394 20001252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00747 66 898 WRKY Transcription Factor Family AT4G12020 28.386 6.70e-75 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00747 - - gmx:100784137 2241.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00747 06 19994394 20001252 Cca06g00747 06 19994394 20001252 ECH
Cca06g00747 06 19994394 20001252 Cca06g00747 06 19994394 20001252 PCT