Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00744 ATGGATCCCATCAACGCCGCCGCCAACACCCCATCCTATCACCTATCGGAGATCTGGCACTTCCCGCCTCCCGCCGCCCCAGACGCCTTGGGCCTCCGGAGCCCCAACTTCGCCAAGAAGAGGCGCCAGGCCCACCACGTCTCCGCCACCAACGCCGTGAAGGAGGGTCAGGGTGGTGGCGATGGGAAGCGCGTTAAGAAGAGTGAAACTCAAAGCAGTTCAGGAAAGCCTGCGGAGCCAGCTTCGGAGCCTCCTAAGCAAGACTACATCCATGTCCGAGCTAGAAGGGGTCAAGCTACCGATAGCCATAGTCTTGCAGAAAGAGCTAGACGGGAGAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTAGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGCCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGGCCCCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTCGATACAACTGGCATGCCATTCGTTTCTCAAGCCGCAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGAGCAACGTAG 660 0.5106 MDPINAAANTPSYHLSEIWHFPPPAAPDALGLRSPNFAKKRRQAHHVSATNAVKEGQGGGDGKRVKKSETQSSSGKPAEPASEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMAPGIEVFPPKDFDQQTFDTTGMPFVSQAAREYSRGSSPEWLHMQVGGGFERAT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00744 219 MobiDBLite consensus disorder prediction 21 87 - -
Cca06g00744 219 CDD bHLH_AtBPE_like 88 173 - -
Cca06g00744 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 148 IPR011598 GO:0046983
Cca06g00744 219 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 219 IPR024097 GO:0006355
Cca06g00744 219 SMART finulus 104 154 IPR011598 GO:0046983
Cca06g00744 219 Pfam Helix-loop-helix DNA-binding domain 102 149 IPR011598 GO:0046983
Cca06g00744 219 PANTHER BNAC05G07950D PROTEIN 61 219 - -
Cca06g00744 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Cca06g00744 219 Coils Coil 145 165 - -
Cca06g00744 219 Gene3D - 95 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00744 Cca-Chr6 19957025 19960165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00744 1 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 47.843 2.83e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00744 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00744 - - gmx:100778795 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00744 06 19957025 19960165 Cca06g00744 06 19957025 19960165 ECH
Cca06g00744 06 19957025 19960165 Cca06g00744 06 19957025 19960165 PCT