Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00735 ATGAGTCTCTTCATCCTCATCACTCTGCTCCTACTCTCCCTCGCCACGCCCTCCGCCACTCAAACATGCTCCTCCACACACACACGCCCCTGCCCACCCTTCTCCTCTAACTCTAACCCCCCCTTCCCATTCTCCTCCTCCCCAGGCTGCGGCCACCCCTCCTTCCACGTCACCTGCGCCACCCCCCACTCCCTCATCTCCATCAACAACCACACCTTCTCCCTCCTCGCCTACAACCCCAACGCCTCCACCATCACCCTCTCCCTCCCCATCCCCACCCACCCCATCAACCTCTCCGCCTCCCCCTTCCGCGTCTCCGCCGCCTCCTGCTCCCGCCTCGCCTTCCTCCGCCCCTGCTCCCCACTCAACTGctccctctccctctccctctccctctcccAATGCCACCTCCTCCACAACCCCTCCCACCTCTTCCAAGACTGCACTTCCACCCACCACTCCCTCGACCACTCCGACCAACCCTGCCAAACCGACCTCCCAGGCTTCCTCCAGCAGTTCCTCCTCACCGGCATCCAACTCCAATGGGACCCCACCCGCGACCCCTACTTCACCAACTGCACTCCATGCCAATCCAACCAAGGTATCTGCGCTTTCAACTCTTCCTCCCCCAACAAACCCTTCCTCTGCCTCCGCTTCCGCCCCCAATCCACTCTCTCCCCTCCCTGGATCCACAAATTCAAACCCAACCACATCGCACTCCTCACCACCATCATCGCACTCACCTCCTTGCTCCTCCTGGTCACAGTCACCACCGCCATTCTCCGCTCCGCTAGGTCAAAACCTCACCCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGCCACCGCTCCGCCACCCTCCTCCCCCCGGTCTTCACCTACGACGACCTCGCCTCCTCCACCAACAACTTCGACTCCAAGCGCAAAATCGGCGACGGCGGCTTCGGCTCCGTCTACCTCGCGCACCTCCGCGACGGAAGGCTCGCCGCGGTCAAGTACCTGCACCGCCACCACGCCACCGCCGCCTTCTCCACCAAGTCCTTCTGCAACGAGATTCTCATCCTCTCCTCGATCAACCACCCCAACCTGGTGAAGCTCCACGGATACTGCAGCGACCCGAGGGGGCTGTTGTTAGTCTACGATTACATCCCCAACGGAACCCTAGCGGAGCACCTCCACAACCGCAAGGGGTCGCTCACGTGGCGTGTGCGCCTGGACATCGCGTTGCAAACGGCGTTGGCGATGGAGTATCTGCATTTCTCGGTGGTGCCGCCGGTTGTGCACAGAGACATAACGTCGTCGAACATCTTCGTGGAGAGAGATATGAGGATTAAGGTTGGGGATTTCGGGCTTTCGAGGCTTTTGGTGGTGCAGGACACGACGTCGTCTTCGAACGGTTTTGTGTGGACCGGGCCGCAGGGGACACCGGGTTATTTGGACCCGGAGTATCACCGGTCGTTCCGGTTGACCGAGAAGAGTGACGTGTACAGCTTCGGCGTGGTGTTGTTGGAGCTTATCTCGGGGCTCAGGGCGGTGGACCAGAGCAGGGACAAGCGCGAAATGGCGCTTGCGGATTTGGTCGTCTCCAGGATTCAGATGGGGCAGCTGCACCAGGTGCTCGATCCCGTTCTCGGGGGCGGCGACGGCGTCTCCTCCGTGGCGGAGCTTGCGTTCCGGTGCGTGGCGGCGGATAAGGATGACCGGCCGGATTCCAGGGAGGTGGTGGAGGAGCTGAAGCGGGTGAGGAGCCGGACGAAGGAGTGA 1998 0.531 MSLFILITLLLLSLATPSATQTCSSTHTRPCPPFSSNSNPPFPFSSSPGCGHPSFHVTCATPHSLISINNHTFSLLAYNPNASTITLSLPIPTHPINLSASPFRVSAASCSRLAFLRPCSPLNCSLSLSLSLSQCHLLHNPSHLFQDCTSTHHSLDHSDQPCQTDLPGFLQQFLLTGIQLQWDPTRDPYFTNCTPCQSNQGICAFNSSSPNKPFLCLRFRPQSTLSPPWIHKFKPNHIALLTTIIALTSLLLLVTVTTAILRSARSKPHPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRHRSATLLPPVFTYDDLASSTNNFDSKRKIGDGGFGSVYLAHLRDGRLAAVKYLHRHHATAAFSTKSFCNEILILSSINHPNLVKLHGYCSDPRGLLLVYDYIPNGTLAEHLHNRKGSLTWRVRLDIALQTALAMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPEYHRSFRLTEKSDVYSFGVVLLELISGLRAVDQSRDKREMALADLVVSRIQMGQLHQVLDPVLGGGDGVSSVAELAFRCVAADKDDRPDSREVVEELKRVRSRTKE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00735 665 Pfam Protein kinase domain 383 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00735 665 ProSitePatterns Tyrosine protein kinases specific active-site signature. 504 516 IPR008266 GO:0004672|GO:0006468
Cca06g00735 665 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 355 663 IPR045274 GO:0007166
Cca06g00735 665 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 265 IPR045274 GO:0007166
Cca06g00735 665 SUPERFAMILY Protein kinase-like (PK-like) 363 656 IPR011009 -
Cca06g00735 665 CDD STKc_IRAK 388 658 - -
Cca06g00735 665 Gene3D Transferase(Phosphotransferase) domain 1 461 665 - -
Cca06g00735 665 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Cca06g00735 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 355 663 - -
Cca06g00735 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 23 265 - -
Cca06g00735 665 Gene3D Phosphorylase Kinase; domain 1 356 460 - -
Cca06g00735 665 ProSiteProfiles Protein kinase domain profile. 382 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00735 Cca-Chr6 19825169 19827166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00735 360 664 Receptor kinase-like Gene Family AT1G69910 72.393 2.48e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca06g00735 Pkinase 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00735 - - gmx:100816739 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00735 06 19825169 19827166 Cca06g00735 06 19825169 19827166 ECH