Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00728 ATGGGTGATCTTGACTACTACAAGATACTGAAGGTGAAGGGTGATGCCACGGATGAGGAGGTGAAGAAGGCCTACAAGAGGTTGGCCAAGAAGTGGCACCCTGATAAGAACCTTGAAGAGCCTCTTAAGAAGGAAGAGTTTGAGGCCAACTTCAAGCAGCTTTGTGAGGCCTATGATGTGCTGAGTGACCCCAAGAAGCGTCAGATATATGACTTGTTTGGTCACTATCCCCTTGACTCTCGCCGCTTAAACAAGGAGAATAGTAATGGGAATGAAAAGGTTGCAGGGGTCATTGAGAGCACCTTGCCGTGTACCCTTCTCGAGCTTTACAACGGTTGCAAAAAGTGGATGAAGGTCTTGAGAACAGTTCCTGATGAATTTGGTAAGTTGAAGTGTGTAGAAGAAATGTTGAAGGTAGATATTGAACCTGGTTGGAAGAAGGGCACAAAAATCACTTTTCCTGGGAAGGGAAACCAAACACTAGGAAGAGCTCCAGCTGATCTAATCCTTGTGTTGGAGGAGATGCCTCATGCTATTTTCAAGAGGAATGGAAATGATTTAGTTGTGGTCCAGAAGATATCACTTGTAGATGCTCTCACAGGAAAGACTCTCAACTTGACTACTTTGGATGGAAGATATCTCACAATCCAAGTCGCTGATATTGTGAAACCAGATTATGAGCTGGTGGTCCCAAACGAGGGCATGCCCATCTCAAAGGAACCTGGCAAGAAAGGGAACCTCAGAATCAAGTTTGATGTTGTGTTTCCATCAAGCCTGGCTTCTCCACTGAAGTGTGATATAACTAGGATTCTGAGTGATGCTGATTACTAA 831 0.4465 MGDLDYYKILKVKGDATDEEVKKAYKRLAKKWHPDKNLEEPLKKEEFEANFKQLCEAYDVLSDPKKRQIYDLFGHYPLDSRRLNKENSNGNEKVAGVIESTLPCTLLELYNGCKKWMKVLRTVPDEFGKLKCVEEMLKVDIEPGWKKGTKITFPGKGNQTLGRAPADLILVLEEMPHAIFKRNGNDLVVVQKISLVDALTGKTLNLTTLDGRYLTIQVADIVKPDYELVVPNEGMPISKEPGKKGNLRIKFDVVFPSSLASPLKCDITRILSDADY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00728 276 Pfam DnaJ domain 5 71 IPR001623 -
Cca06g00728 276 CDD DnaJ_C 98 259 - -
Cca06g00728 276 SUPERFAMILY HSP40/DnaJ peptide-binding domain 99 177 IPR008971 GO:0006457|GO:0051082
Cca06g00728 276 PRINTS DnaJ domain signature 7 25 IPR001623 -
Cca06g00728 276 PRINTS DnaJ domain signature 25 40 IPR001623 -
Cca06g00728 276 PRINTS DnaJ domain signature 46 66 IPR001623 -
Cca06g00728 276 PRINTS DnaJ domain signature 66 85 IPR001623 -
Cca06g00728 276 CDD DnaJ 5 63 IPR001623 -
Cca06g00728 276 Gene3D - 177 257 - -
Cca06g00728 276 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Cca06g00728 276 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Cca06g00728 276 Pfam DnaJ C terminal domain 98 256 IPR002939 -
Cca06g00728 276 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 273 - -
Cca06g00728 276 SMART dnaj_3 4 66 IPR001623 -
Cca06g00728 276 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 259 IPR008971 GO:0006457|GO:0051082
Cca06g00728 276 Gene3D - 98 175 - -
Cca06g00728 276 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 273 - -
Cca06g00728 276 SUPERFAMILY Chaperone J-domain 2 78 IPR036869 -
Cca06g00728 276 Gene3D DnaJ domain 2 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00728 Cca-Chr6 19727138 19728816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00728 6 71 C2H2 Transcription Factor Family AT1G74250 40.299 1.61e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00728 K09510 - gmx:100778440 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00728 06 19727138 19728816 Cca06g00728 06 19727138 19728816 ECH
Cca06g00728 06 19727138 19728816 Cca06g00728 06 19727138 19728816 PCT