Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00720 ATGAGTCGCAAGAGAGACAGGTCCCACTTTTCCCGCCACGACGCCGCAAAGCGCCGCCGCCCCTTGCCGGAGCCCGCGGAGGAGGAGAGACCCACTATAAGGCCGCCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCCCCCAGGACTGCTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTTGGCTACATCACCTACCGGACCAGGGACTccgccgacgccgccatcgccgccgGCCTCGACCCCTCCTTTGAAATCACCGTTAATTCCAAAAAGGTTCAGGTGTTGTGGGCAACGGATCCTCTGGCCATGTGGAGGCAAGGAGTAGGTAATAGCAAGGATAAAGGGTCCATGTCAAAGCTCGTGCGTGCTGAGGTACCCTTGAGCAAGCATGGAAGAGGTAAAAGACTCGCGTCGACTATAGGTAACACCAAACGCAGTGAGGATAGCTCGGGTAGCTCAGTTTTAGACGTGCCTTTCAAGGGCAGAGAAATTAAAGATGAATCAGAGAAACGAGTGTGGAGTTGGGGTGCTGGAACGGAGGGTCAGTTAAGAACAAAGATTCTTCAAGACGAAAACTTCCCTCAACTCCTTCATCAACCCTCTCTCTCCTCCGTCTCTTCCCTAGCCTGTGGCGGCGCTCATGTCATAGCCTTGACCTCTGCTGGGAAGGTGCTATCATGGGGGAGGGGCAATTCTGGCCAACTAGGCCACGGTGAGGTTGTGAGTAACGCTTTGTATCCAAAGGCTGTAACATCATTGGATGGTTACGTCATAACCCATGTCGCCGCTGGCTGGAGCCACTCAGCTTTTGTTTCTGATCCTGGGTGTGTGTTCACTTGTGGGGATGGCTCGTTTGGTCAACTGGGGCATGGGGATCAGGCCTCGCACTACTCTCCTGTCAAAGTGTCATGCTTTGTTGATCAGCATGTTGCGCAGGTGGCATGTGGCATGCGCCATTCACTTGTCTTGTTAAAAGGTCGTTGTTGTTATGCTGATTGTGCAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCAACGATAGGATCAAATCTGTTAATGTTCCTAGAGTTGTCAGTGGCTTTGAAGGTGTTGAAATCATTGAAATTGCTGCAAATGGAGATCACAGTGCTGCAGTATCTGTTGATGGGCATGTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCATGTTCCTCAGTGCTTGAACTCGACTTTGAATTTTACCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCTATGAGTGGTGAGGAGGAGGTTTATATGCTAGGTGGGAACCACCCTGGAGTGCTTAGTGATCTTCAGAATATAAGACCGGCTAAGCATTTAACTGATTTTAGAGAAGTCAATTTGGAGAAAGTCCCTGGCCTTGATGAGATGAAGATTACTGATATTGCTACCGGAGCTGAGCATTCTGTCATTGTCACAGGCAAGATGCAGTCTTGCTCTCAAGCTAAACATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGTTTAGGGGATACTTGCGACCGAATCAGTCCTGCTACAGTTAGTCTCGATTATGATCTGAATGAAGCTGCATCAATTAGAGTTTTCTGTGGAAGTGGGTTCACGTTTGCTATAACCATGCCCTAG 1719 0.4985 MSRKRDRSHFSRHDAAKRRRPLPEPAEEERPTIRPPPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTRDSADAAIAAGLDPSFEITVNSKKVQVLWATDPLAMWRQGVGNSKDKGSMSKLVRAEVPLSKHGRGKRLASTIGNTKRSEDSSGSSVLDVPFKGREIKDESEKRVWSWGAGTEGQLRTKILQDENFPQLLHQPSLSSVSSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGEVVSNALYPKAVTSLDGYVITHVAAGWSHSAFVSDPGCVFTCGDGSFGQLGHGDQASHYSPVKVSCFVDQHVAQVACGMRHSLVLLKGRCCYADCAGNQVYGFGSGKRGQLGVNDRIKSVNVPRVVSGFEGVEIIEIAANGDHSAAVSVDGHVYTWGRGFKGFEDAHVPQCLNSTLNFTKVALGWNHALAMSGEEEVYMLGGNHPGVLSDLQNIRPAKHLTDFREVNLEKVPGLDEMKITDIATGAEHSVIVTGKMQSCSQAKHGEIKTWGWGEHGQLGLGDTCDRISPATVSLDYDLNEAASIRVFCGSGFTFAITMP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00720 572 SUPERFAMILY RNA-binding domain, RBD 27 121 IPR035979 GO:0003676
Cca06g00720 572 Pfam Regulator of chromosome condensation (RCC1) repeat 237 286 IPR000408 -
Cca06g00720 572 Pfam Regulator of chromosome condensation (RCC1) repeat 352 400 IPR000408 -
Cca06g00720 572 Pfam Regulator of chromosome condensation (RCC1) repeat 186 233 IPR000408 -
Cca06g00720 572 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Cca06g00720 572 Pfam Regulator of chromosome condensation (RCC1) repeat 290 338 IPR000408 -
Cca06g00720 572 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Cca06g00720 572 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 187 566 - -
Cca06g00720 572 PANTHER OS01G0777800 PROTEIN 187 566 - -
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 290 341 IPR000408 -
Cca06g00720 572 Gene3D - 1 116 IPR012677 -
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 289 IPR000408 -
Cca06g00720 572 Gene3D - 473 571 IPR009091 -
Cca06g00720 572 MobiDBLite consensus disorder prediction 147 169 - -
Cca06g00720 572 MobiDBLite consensus disorder prediction 154 168 - -
Cca06g00720 572 SUPERFAMILY RCC1/BLIP-II 344 570 IPR009091 -
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 185 236 IPR000408 -
Cca06g00720 572 MobiDBLite consensus disorder prediction 17 31 - -
Cca06g00720 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 91 IPR000504 GO:0003723
Cca06g00720 572 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Cca06g00720 572 PRINTS Chromosome condensation regulator RCC1 signature 513 534 IPR000408 -
Cca06g00720 572 PRINTS Chromosome condensation regulator RCC1 signature 239 255 IPR000408 -
Cca06g00720 572 PRINTS Chromosome condensation regulator RCC1 signature 220 233 IPR000408 -
Cca06g00720 572 PRINTS Chromosome condensation regulator RCC1 signature 353 367 IPR000408 -
Cca06g00720 572 MobiDBLite consensus disorder prediction 1 16 - -
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 403 IPR000408 -
Cca06g00720 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 114 IPR000504 GO:0003723
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 572 IPR000408 -
Cca06g00720 572 SMART rrm1_1 40 103 IPR000504 GO:0003723
Cca06g00720 572 SUPERFAMILY RCC1/BLIP-II 185 345 IPR009091 -
Cca06g00720 572 CDD RRM_SF 41 92 - -
Cca06g00720 572 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 447 IPR000408 -
Cca06g00720 572 Gene3D - 153 344 IPR009091 -
Cca06g00720 572 Gene3D - 345 472 IPR009091 -
Cca06g00720 572 MobiDBLite consensus disorder prediction 1 39 - -
Cca06g00720 572 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 276 286 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00720 Cca-Chr6 19601720 19616545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00720 1 168 Homeobox Transcription Factor Family AT1G27050 53.889 1.05e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00720 - - gmx:100793672 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00720 06 19601720 19616545 Cca06g00720 06 19601720 19616545 ECH