Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00719 ATGGCGAGTGGCAAGCTTTATGCTGGTTCAAACATGTCACTTCTTCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAATCCTGCTTCCTTCCAAGGTTCAAAATCTGTGGTTGATTTTGAGAATGTTAGTGGGGGCAGGGTGGCGGATAGGCCCTTTTTTCAAGCGTTGGAGAAGGAAGAGAACTGTGATGAGGATTATGAGGGGTGTTTCCATCAACCGGGGAAGAAGAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAACGGAACTTTGAGGTAGAGAACAAGCTTGAGCCTGAAAGGAAGGTTCAACTTGCAAAGGAACTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGACTATGGCGCATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTGTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGGTAAAGAGAAGGAGAATTTGGATGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAAATGCAACATCTGAGAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAACCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTTCATTCGTGGAGCCTGCTGATTCATCCCATGCCTTTGAACCTGAACACTCGGATTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAACCTTTTGACCCTCCCTTGCTTACCTAAGGTTGAGGAACCCTGCTATGATCACCCTCCTGAAAACTCTTGTAACTTTGGCTTCCAGGTTGAAGATCAAACCTTCTGTTTCTGGCCCTACTGA 972 0.4496 MASGKLYAGSNMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSVVDFENVSGGRVADRPFFQALEKEENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGALKASYDRLKGDYESLVQENDKLKAEVNSLESKLILRGKEKENLDDKSSPDAVNSPHKEPMDLISNSNATSENGTKVSLPIMVTCKQEDANSTKSDVLDSDSPHCTSFVEPADSSHAFEPEHSDFSQDEEDNLSENLLTLPCLPKVEEPCYDHPPENSCNFGFQVEDQTFCFWPY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00719 323 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Cca06g00719 323 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Cca06g00719 323 SMART HOX_1 83 145 IPR001356 GO:0003677
Cca06g00719 323 Coils Coil 154 181 - -
Cca06g00719 323 MobiDBLite consensus disorder prediction 208 223 - -
Cca06g00719 323 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Cca06g00719 323 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 323 - -
Cca06g00719 323 Gene3D - 89 135 - -
Cca06g00719 323 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Cca06g00719 323 Gene3D - 136 183 - -
Cca06g00719 323 MobiDBLite consensus disorder prediction 189 223 - -
Cca06g00719 323 CDD homeodomain 84 142 IPR001356 GO:0003677
Cca06g00719 323 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Cca06g00719 323 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Cca06g00719 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 323 IPR045224 GO:0003700
Cca06g00719 323 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00719 Cca-Chr6 19563334 19565915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00719 43 253 Homeobox Transcription Factor Family AT3G01470 45.024 1.30e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g00719 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00719 - K09338 gmx:547565 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00719 06 19563334 19565915 Cca06g00719 06 19563334 19565915 ECH
Cca06g00719 06 19563334 19565915 Cca06g00719 06 19563334 19565915 PCT