Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00715 ATGGAGGAGCATCGCGTCGCCGCAGCGGAACGATCCTTCCAGACGTGCTACTCCGGCGAGGCGCGCCACGCCCTCGACCTCCTCCCTGACTGCTTCACCATCACCGACCCCTCCCTCCCCGGCCACCCCATCGTCTTCGCCAGCCCCGCCTTCCTCAAGCTCACCGGCTACACGCGCCGCGAGGTCCTCGGCCGCACCGCCGCCCTTTTCCAGGGCCCCCACACTTCCCGCGCCTCCCTCCTCCAAATCCGCGAAGCCGTCAGAGCCGAACGAACCGCGCAACTCGTTTTGCTCAATTACCGCAAAGACGGCACGCCCTTTTGGATGCTCTTCCGCGTCTCCCCCGTCTTCGGCCACCTCTCCGGCGCCGTCGTCCACTTCCTCGCCGTCCAGGTCCCCCTCCTCCGCCACCACGCCTCCTCCCCCGTCCGCGACTTCGCCTTCCGCTGCTGCCGCAAGGAAGTCTGCGCCGACTCCTTATCCGAACTCAATCGCGTTTCTTCCTTCGACCAAGTGCTCGAAGATCGTGATGTCAGAGAGGTGGAGAGAGAAGAGCCGTGTGAGGCGAATGAGGAGGAGAAGCGGAGTGCGGTTACTGCCATGGAGAATGTCTTTTCTGTGCTGACCCATTACAGTGAGGTCACGGGGAGATTGGTGTGCAGTAAGAGAACTAATCCGCGGTTACCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGGAAGAGATGAAGTTTTGGGGCGCAACTGTAGATTTTTAGGTGGAACTGATACTGATACCTCGACTTTACATCTGATAAGGGAAAACATAAGAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGGTTCTGGGAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACGACTATAAAAACGAGGATGGCCAGTGTTTGAGTCCTGAGAAGAGGCAGCTTAGCGTTGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGTCTGCGGGATCTTCGAAGTCTTAG 1086 0.5543 MEEHRVAAAERSFQTCYSGEARHALDLLPDCFTITDPSLPGHPIVFASPAFLKLTGYTRREVLGRTAALFQGPHTSRASLLQIREAVRAERTAQLVLLNYRKDGTPFWMLFRVSPVFGHLSGAVVHFLAVQVPLLRHHASSPVRDFAFRCCRKEVCADSLSELNRVSSFDQVLEDRDVREVEREEPCEANEEEKRSAVTAMENVFSVLTHYSEVTGRLVCSKRTNPRLPDMPIVYASDAFLKLTGYGRDEVLGRNCRFLGGTDTDTSTLHLIRENIRTEQPCTVRILNYRKDKSSFWNFLHISPVRDGSGKVAYFVGVQIEDDYKNEDGQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00715 361 Pfam PAS domain 29 131 IPR000014 -
Cca06g00715 361 Pfam PAS domain 229 319 IPR000014 -
Cca06g00715 361 PANTHER PROTEIN TWIN LOV 1 11 360 - -
Cca06g00715 361 SMART pas_2 206 281 IPR000014 -
Cca06g00715 361 SMART pas_2 19 92 IPR000014 -
Cca06g00715 361 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Cca06g00715 361 PANTHER PROTEIN TWIN LOV 1 11 360 - -
Cca06g00715 361 SUPERFAMILY PYP-like sensor domain (PAS domain) 229 319 IPR035965 -
Cca06g00715 361 CDD PAS 229 318 IPR000014 -
Cca06g00715 361 SMART pac_2 94 137 IPR001610 -
Cca06g00715 361 SMART pac_2 283 325 IPR001610 -
Cca06g00715 361 ProSiteProfiles PAS repeat profile. 233 255 IPR000014 -
Cca06g00715 361 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Cca06g00715 361 CDD PAS 44 119 IPR000014 -
Cca06g00715 361 Gene3D PAS domain 223 358 - -
Cca06g00715 361 Gene3D PAS domain 31 209 - -
Cca06g00715 361 TIGRFAM sensory_box: PAS domain S-box protein 44 121 IPR000014 -
Cca06g00715 361 TIGRFAM sensory_box: PAS domain S-box protein 233 318 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00715 Cca-Chr6 19359186 19363133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00715 224 352 AGC Kinase Gene Family AT5G58140 43.411 1.19e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00715 - - gmx:100785562 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00715 06 19359186 19363133 Cca06g00715 06 19359186 19363133 ECH