Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00713 ATGGGGCTGGGTGCTCAGAATGGTAAGGTGGTGGAGTCTTGGGATGTGTGTAAATCAAAGGGGAGGAAGAAGAAGAAACAGGGGGATGAGGAGGTGGAAGGGGCTGAGGCTGGGTGTTGGGTTAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTCAGCGGCAGTGGCACCAGTACTCATTATGCTGAGAGTAAATCAACTAATGATACAAGTAGAGACCAACCAACAGTTCCAGCAGTCTCTTCTACAACCACTAGTAATACAGAAAGCAATTCATCCACTTCCAAACTTGAAGAAGAGCTTAAAATTGCTTCCAGGCTGCGAAAGTTCTCTTTCAATGATCTAAAGTTAGCAACAAGAAATTTTCGGCCTGAGAGTTTTCTTGGTGAAGGTGGGTTTGGCTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCCCCGGTGAAACCAGGCACGGGCCTTACTGTTGCTGTTAAAACCCTCAACCATGACGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCAAAACCTTGTAAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAATCACTTATTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATATATAGGGATTTTAAAACTTCGAATATATTATTAGATGCAGACTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACGGGTCATCTTACATCAAAAAGTGATGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACCGGCAGAAGATCCATGGACAAACACCGACCCAATGGTGAGCATAACCTTGTGGAATGGGCTCGACCACATCTTGGAGAGAGGAGAAGGTTCTACAGGTTGATAGACCCTCGTCTTGAAGGTCACTTTTCCATAAAAGGAGCTCAGAAAGCTGCTCAACTGGCTGCTCACTGCCTTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTTGAAGCTTTGAAGCCTTTGCCAAACCTTAAGGACATGGCAAGCTCTTCATATTATTTCCAGGCAATGCAAGCTGATCGCTTTGGCGCGAGCCCAAACACAAGAAATGGGCGAACACAAGGCGCATTGCTCACCCGCAATGGACAGCAGCAAAGGAGCCTCTCAATACCAAATGGTACTTATGCATCTCCATATCATCAGTTTCCCCAACCATCACCGAAACCTAATGGCAAAGCATAG 1458 0.4527 MGLGAQNGKVVESWDVCKSKGRKKKKQGDEEVEGAEAGCWVRLRFIGSCISSRSKVDSSVSGSGTSTHYAESKSTNDTSRDQPTVPAVSSTTTSNTESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQAMQADRFGASPNTRNGRTQGALLTRNGQQQRSLSIPNGTYASPYHQFPQPSPKPNGKA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00713 485 MobiDBLite consensus disorder prediction 54 106 - -
Cca06g00713 485 Gene3D Transferase(Phosphotransferase) domain 1 216 430 - -
Cca06g00713 485 CDD STKc_IRAK 136 413 - -
Cca06g00713 485 MobiDBLite consensus disorder prediction 54 102 - -
Cca06g00713 485 MobiDBLite consensus disorder prediction 435 485 - -
Cca06g00713 485 Gene3D Phosphorylase Kinase; domain 1 89 215 - -
Cca06g00713 485 SUPERFAMILY Protein kinase-like (PK-like) 108 410 IPR011009 -
Cca06g00713 485 Pfam Protein tyrosine and serine/threonine kinase 135 410 IPR001245 GO:0004672|GO:0006468
Cca06g00713 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cca06g00713 485 ProSiteProfiles Protein kinase domain profile. 130 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00713 485 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 61 476 - -
Cca06g00713 485 MobiDBLite consensus disorder prediction 435 473 - -
Cca06g00713 485 ProSitePatterns Protein kinases ATP-binding region signature. 136 168 IPR017441 GO:0005524
Cca06g00713 485 PANTHER OS01G0588500 PROTEIN-RELATED 61 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00713 Cca-Chr6 19305513 19309590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00713 77 410 Glycoside Hydrolase AT3G07070 53.412 1.07e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca06g00713 PK_Tyr_Ser-Thr 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00713 - - gmx:100787151 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00713 06 19305513 19309590 Cca06g00713 06 19305513 19309590 ECH