Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00705 ATGTCGCAGGTTCAATCCATTACCTTGAAGCATCGCTCGCTACCTATGCACTCTTTCGTTCCTCCAAACTTCCTTATTCCTTTGAAACGCAACGTTTCATTGACACCCACACCCAACTCCCCATCACTCTCTGTCAAATGCTACCACCCCAAACCCTCTTCCTCACCTCCCCAATACCCTCCAATTGGAGGAGAATCGCTGCAAAAGGTCTACGTTGGTTACTCCATTTACACTTTGAAGGGTGTGATCACGGTGGCTCCTAGACCTCCGGAATTCGAACAAAAAAATTCCGGGGCGTACGCAGTGTCTAGGGAAGGTTATGTGCTGCTCCAGTTTGCTCCTTCACTTGGTGCTGATGAGGTCACATATGATTGGAACCAAAAGGAGGTATTTGCACTATCAGTGAGTGAAATGGCAACTCTAATTAACCTTGGATCGAGGGATTCTTGTGAATTTTTACATGAGACTATGAAACCTAAAAGTGATGAATATGAAGTCAGAAAAGTTTTGAAGGTGGAGCCAGTTCTGGATGCTTCTGGTCACTTAATTAGCTTAAGTGTTCAAAAGAAGCATGAGAACGAGAACATGAACGAAATTGAGAAAAGCATCTTTATCCCTGTTGTAAGGGCAGAGCTAGCGGTTTTGAGGTCGACTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGCAAACACCATAAAGCCAGAGGTATATAATCGAGTGAATAGTACCAACCCCAGATACAGAGCAAACGATGAATGGAACAGATAG 780 0.4385 MSQVQSITLKHRSLPMHSFVPPNFLIPLKRNVSLTPTPNSPSLSVKCYHPKPSSSPPQYPPIGGESLQKVYVGYSIYTLKGVITVAPRPPEFEQKNSGAYAVSREGYVLLQFAPSLGADEVTYDWNQKEVFALSVSEMATLINLGSRDSCEFLHETMKPKSDEYEVRKVLKVEPVLDASGHLISLSVQKKHENENMNEIEKSIFIPVVRAELAVLRSTFNYIMPYLLGWNAFANTIKPEVYNRVNSTNPRYRANDEWNR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00705 259 Gene3D Transcriptional Coactivator Pc4; Chain A 64 248 IPR009044 GO:0003677|GO:0006355
Cca06g00705 259 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 52 259 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cca06g00705 259 Pfam Whirly transcription factor 76 217 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cca06g00705 259 SUPERFAMILY ssDNA-binding transcriptional regulator domain 69 259 IPR009044 GO:0003677|GO:0006355
Cca06g00705 259 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 52 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00705 Cca-Chr6 19222285 19225976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00705 69 259 Whirly Transcription Factor Family AT1G14410 55.497 9.82e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Cca06g00705 Whirly 1.5e-43 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00705 - - gmx:100797370 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00705 06 19222285 19225976 Cca06g00705 06 19222285 19225976 ECH