Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00704 ATGGAAGACAATAACTTCTTGGATTCTAACGATGATGAAGAGATTGGTAGCGAGAAGGATCAAAAGCTGGAATCAGCTAAGGGTGAGCCTAGAGAAGAGAACAAGATGTTGGAGTTCTTTGACATCCTTCAACAAGATAAAGCTGAAGATGCTACAAATGCTAAAGGTACAATTAGCTATGAGGAAAGTGAAGAAAGTGAACTAGTGTCTCTTTCTCTTGGGATATCATCCAATATTGGTGAGGGTATTGTGGATAAACGACTTGAACTTGGGTTAGATATCAATTTGGATCCTTTGGATGAAGCTGAAGATGCAAATAATCTCAGCACTGAAAGTAGCTTTGGTGAGGGAGGGAAGGAAGAGGAACCAACTGAGATGTGGCCACCCAGTAAAGTTTTGAAGACAATGAAAAGTGGGGATAAAAGTGAAGCTTCTCAAAAACATGATCAGAAGAAGGCTAGGGTTTCTATTAGAGCCAGATGTGATGCACAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGTCCCCGAGCGTACTATAGATGCACTGTTTCTCCATCTTGTCCTGTAAGAAAACAGGTGCAAAGATGTGCCGAAGACATGTCCATATTGATTACCACCTATGAAGGAATCCACAATCATCCACTTCCTATGTCAGCCACTGCAATGGCTTGCACCACTTCTTCTGCATCCACAATCATCCACTTCCTATTCAATTCAGCTATATCCTCCATCATCAACTCTTTTGCTCCTAATAATTACAACCCTAATAATGCTCTAAACTTCTCTACATACCAAGTTCCAAGACCACCTCAATTCTACATCCCCAACCCATCCATTTCAACCTTCAATTCTCACCCCACAATCACTCTTGACCTTACAACACCTCCATCTTCCTCAAATTCAACCTTCACTCACGTGCCAAAATACTCACCAACAAGCCTTAATTTTAATTCTTCAGGGTTCTCTCCTCTACAATCTAGCATTTCTCAATCACCTTGGATCAACAGTTTTAGTGCTTACTTCAACACTGGAACAGTAACTCAAAACACAAACCATGGTGGTAATTACATGTTAAACACCGGAAATATTCAACCATCTCTAGGGCATCTCCATCAACCTATTTACATGAGCAACAACAACACCATTTCTCAGCAATCTTTTCCTGATCCAATTGTTGCTGCAACCAAGGCAATCACAAGCAACCCAAAATTTCAATCAGCTTTGGCAACTGCTCTCACAACATATGTTGGCAATGAAGGTGGTGGTGGTGGTAGGTTAAGAGAAAATCATGTCACTGAAAGTGCAGAATTGAACTCAAAGCTATGTAGTGAAAATACCATAGCATGTGCATCATCAAGAAACTCGAATATGTTTCCATTACCACTTCAGGTGTCTAAAAGTGCCTCTGGTTCGTGTTCTAATAGAAGTAACCAGCTCTTGGAGCAATGGAAGTGA 1488 0.4073 MEDNNFLDSNDDEEIGSEKDQKLESAKGEPREENKMLEFFDILQQDKAEDATNAKGTISYEESEESELVSLSLGISSNIGEGIVDKRLELGLDINLDPLDEAEDANNLSTESSFGEGGKEEEPTEMWPPSKVLKTMKSGDKSEASQKHDQKKARVSIRARCDAQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPSCPVRKQVQRCAEDMSILITTYEGIHNHPLPMSATAMACTTSSASTIIHFLFNSAISSIINSFAPNNYNPNNALNFSTYQVPRPPQFYIPNPSISTFNSHPTITLDLTTPPSSSNSTFTHVPKYSPTSLNFNSSGFSPLQSSISQSPWINSFSAYFNTGTVTQNTNHGGNYMLNTGNIQPSLGHLHQPIYMSNNNTISQQSFPDPIVAATKAITSNPKFQSALATALTTYVGNEGGGGGRLRENHVTESAELNSKLCSENTIACASSRNSNMFPLPLQVSKSASGSCSNRSNQLLEQWK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00704 495 MobiDBLite consensus disorder prediction 15 34 - -
Cca06g00704 495 SMART WRKY_cls 166 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00704 495 MobiDBLite consensus disorder prediction 102 155 - -
Cca06g00704 495 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 467 IPR044810 GO:0003700
Cca06g00704 495 PANTHER WRKY TRANSCRIPTION FACTOR 72B 7 467 - -
Cca06g00704 495 MobiDBLite consensus disorder prediction 136 155 - -
Cca06g00704 495 SUPERFAMILY WRKY DNA-binding domain 159 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00704 495 Pfam WRKY DNA -binding domain 167 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00704 495 Gene3D WRKY domain 150 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00704 495 ProSiteProfiles WRKY domain profile. 161 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00704 495 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00704 Cca-Chr6 19209173 19216232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00704 37 431 WRKY Transcription Factor Family AT5G15130 38.202 1.72e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca06g00704 WRKY 6.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00704 - - gmx:100797911 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00704 06 19209173 19216232 Cca06g00704 06 19209173 19216232 ECH
Cca06g00704 06 19209173 19216232 Cca03g00548 03 9296910 9301564 ECH
Cca06g00704 06 19209173 19216232 Cca11g01930 11 44650725 44655503 ECH
Cca06g00704 06 19209173 19216232 Cca07g02129 07 49141645 49144930 ECH
Cca06g00704 06 19209173 19216232 Cca09g00205 09 4300531 4303643 ECH