Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00699 ATGGGGAAAGGAAGGAGTCCTGGGAAATGGTTCAAGAACTTACTCTTAGGGAAAAAATCCTCGTCAAAGTCTACTTCATCAAAGAAGAACGATATTTTTAAACCTTTAAGTGACAAGGATCCGCTGGTGTCTTCTGAGGTGCCTGTGACTGACCCAACTGTGGATTCTTTGCGGATATCCTCACCAATATCCGGAGTTAATGATACTAAAGGAGTGCTTTCAGAAAAGGTGGTAGTTAGTAGGTCGTCACAAGATAGGGATGTGCTTTCAAATGGAGATGAAGGGGTTAAGGTGCTAGAAGTTGCTAATTGTGGATCTCAAGAGGATGTTGAGAAACTCCAGCTTATCGAAGCAGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATCTGGCTCGTCAAACATTTCAAACACTCAAAGGTGTCATACAACTGCAAGCTCTTATTCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGCGTGAAGGGAATAGTTAAATTGCAAGCATTGGCTCGTGGTTACAATGTTAGATGTTCTGATATTGGGCTTGCAGTCCAGAAAATTCGTAAGGATACTCATTGTTCAAATTCTATTCGGGCAGTTTCATCCACACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATCTGCAGTTCCTCTTTCACTCAATGGTGACCCTGGAGAACCTAAACTGGCCTGGAAGTGGCTGGACTATTGGACACAGTCACACTTCTGGGCCCCTCTTCCCAAATTGAAAAGGAAACTTGACTCCGTGTCTGATGAGAAAAATGGAAGTTCTCAGACAGTTGAAACGGGAGAAGTTAAAAAAAATACTCGGAAATCTACTTCTTTGAAAGCTGACAATGGCCCAAATTTAGGATCCAACAAATCTAAACTGCGTCCGAAAAAGGATTCAAGCCACCCATTGTCTTCAGCTCAGGAACAGCCACAAAAAGAAACCAAGAAAAGTAGTGCTGAAAAAGTTCACAATGGATCTGAGGTTGTTAATGAAAAAAGAAAATCCAGCGGTAGAAAGATTTTGGATCATGCTGTTACTGATATTTCAGAGAAGGGCCCTAGTGCCTCTTCAGAGAAAACGAAAGATTCAACAGAGCCAAAGTCAAAAGAGTCTGATGCTGAGAAAGCTCTTGGACAGCAAGCAAACGACAAGAATGATGAACCACATAATGATCCATTTGCTGTCTTAAAGACTAGTGTCGAGAAGGGTGAAAATGAAAGAATTCAAGGAGTCAGCGACGATTTGAATGGTGGTGACAATTGCATCAGTAACAATTGCCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGATAATGAGTTGTATAACACTCCAAGATTGCCCAGTTATATGGCTCCTACTGAATCTGCAAAAGCTAAGCTAAGAGCACAAGGGTCCCCAAGATTTGCTACTGATTTGGTAGAGAAAAATGGTACAACCAGGCGGCATTCACTTTCATCCTCACTTACATCCTCACTTAATGGCAAGTCAGGTTCATTTTCCCCAAGAGCTGAAAGGTTGGTAGCCATGAGCAGCAGAGGAGCGATAAGGTCTGATAGATCTCTTTCATCTTCAAGGGATGGAACTGAGAAGATAATCCAACCTCAGTGGAGAAGGTGA 1677 0.4222 MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPLSDKDPLVSSEVPVTDPTVDSLRISSPISGVNDTKGVLSEKVVVSRSSQDRDVLSNGDEGVKVLEVANCGSQEDVEKLQLIEAAIKVQAACRSYLARQTFQTLKGVIQLQALIRGHLVRRQAVSALYCVKGIVKLQALARGYNVRCSDIGLAVQKIRKDTHCSNSIRAVSSTQAEKLSENVFVCKLLASSPSAVPLSLNGDPGEPKLAWKWLDYWTQSHFWAPLPKLKRKLDSVSDEKNGSSQTVETGEVKKNTRKSTSLKADNGPNLGSNKSKLRPKKDSSHPLSSAQEQPQKETKKSSAEKVHNGSEVVNEKRKSSGRKILDHAVTDISEKGPSASSEKTKDSTEPKSKESDAEKALGQQANDKNDEPHNDPFAVLKTSVEKGENERIQGVSDDLNGGDNCISNNCQRRASLPANFNDQDNELYNTPRLPSYMAPTESAKAKLRAQGSPRFATDLVEKNGTTRRHSLSSSLTSSLNGKSGSFSPRAERLVAMSSRGAIRSDRSLSSSRDGTEKIIQPQWRR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00699 558 MobiDBLite consensus disorder prediction 499 518 - -
Cca06g00699 558 MobiDBLite consensus disorder prediction 17 31 - -
Cca06g00699 558 MobiDBLite consensus disorder prediction 16 49 - -
Cca06g00699 558 Pfam Protein of unknown function (DUF4005) 457 537 IPR025064 -
Cca06g00699 558 MobiDBLite consensus disorder prediction 330 363 - -
Cca06g00699 558 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Cca06g00699 558 PANTHER IQ-DOMAIN 5-RELATED 1 555 - -
Cca06g00699 558 MobiDBLite consensus disorder prediction 371 408 - -
Cca06g00699 558 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 555 - -
Cca06g00699 558 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Cca06g00699 558 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Cca06g00699 558 Pfam IQ calmodulin-binding motif 117 136 IPR000048 GO:0005515
Cca06g00699 558 MobiDBLite consensus disorder prediction 535 550 - -
Cca06g00699 558 SMART iq_5 137 158 IPR000048 GO:0005515
Cca06g00699 558 SMART iq_5 114 136 IPR000048 GO:0005515
Cca06g00699 558 Gene3D - 114 161 - -
Cca06g00699 558 MobiDBLite consensus disorder prediction 494 558 - -
Cca06g00699 558 MobiDBLite consensus disorder prediction 268 429 - -
Cca06g00699 558 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Cca06g00699 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 157 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00699 Cca-Chr6 19169078 19174932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00699 4 558 IQD Protein Family AT1G14380 35.644 1.19e-79 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00699 - - gmx:100800548 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00699 06 19169078 19174932 Cca06g00699 06 19169078 19174932 ECH
Cca06g00699 06 19169078 19174932 Cca03g00549 03 9371093 9377709 ECH
Cca06g00699 06 19169078 19174932 Cca11g01937 11 44736880 44745884 ECH