Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00695 ATGCAAGATATgaagaaggagcagaagcagaagcagaatcagCTGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTAAGAGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCACGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTAAATTCCGATTTCAAGAAAGGAGGATGGTCTCCAGAGGAGGACATGCTTTTATGTGAGGCACAAAAATTATTTGGCAACCGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAATCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAAAACAACACTTCATACATCAATTCAAATAACAAAAGGATTTTTCTCCAGCACGGGTGTGATACAGATATAGCATCAGAATCTGCAGTAGCTATTAAGAAAATGAGGAGATCCCATATCCCTGATGCTGCAGAAAAGATCAACTTTGGAGACAGATCACATAAACAAAATGGGATTCCAATAAATCAGCAACCAAGAGCACCATTTTCAGTTTTAGCTCAAAACTCTCACAATGTCAACTTGCCAGACCAGCATCATGCCTGCAATTTGAAGTTTAGTGATTATGTCCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAATGCATTGATGCAACAAGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACGTGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGAACCAAAGAATCGGACGTTCAAAGATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGATTTGTTGGAGGACTTAAAGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGAAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACAGGATCAACTCTTCTGCCTCATTCAACTGGTGACAATTTGGAACACTCACTGCATCAAGATATTGGAACTGAACTGAATATACAAATTGGAGATCAAAAAGGAGTTGGGGGATGTGACCAAGGGGTTCTTTCTAGTGCAACTCTGGATCAAGGTTCGGAGGAGTTCAGTTCACCTCTTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGAGTCTCCGTCGCTCAATCCAAGTGCCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGA 1368 0.3977 MQDMKKEQKQKQNQLVNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFTDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIFLQHGCDTDIASESAVAIKKMRRSHIPDAAEKINFGDRSHKQNGIPINQQPRAPFSVLAQNSHNVNLPDQHHACNLKFSDYVQNNKIQGTFLKKDDPKINALMQQAELLSSLALKVDAENVDQSLENAWKVLQEFLNRTKESDVQRYKIPDLQLVDLKDLLEDLKSSSEEIQPCWRKMELYEDSPGSSEYSTGSTLLPHSTGDNLEHSLHQDIGTELNIQIGDQKGVGGCDQGVLSSATLDQGSEEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANPSQPPLCKRALLI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00695 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Cca06g00695 455 Coils Coil 1 26 - -
Cca06g00695 455 CDD SANT 29 73 IPR001005 -
Cca06g00695 455 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g00695 455 PANTHER MYB PROTEIN-RELATED 9 454 - -
Cca06g00695 455 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Cca06g00695 455 Gene3D - 81 150 - -
Cca06g00695 455 Pfam Myb-like DNA-binding domain 30 90 - -
Cca06g00695 455 SMART sant 26 75 IPR001005 -
Cca06g00695 455 SMART sant 78 126 IPR001005 -
Cca06g00695 455 PANTHER TRANSCRIPTION FACTOR MYB88 9 454 - -
Cca06g00695 455 SUPERFAMILY Homeodomain-like 26 120 IPR009057 -
Cca06g00695 455 CDD SANT 82 123 IPR001005 -
Cca06g00695 455 Gene3D - 16 78 - -
Cca06g00695 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 73 IPR017930 -
Cca06g00695 455 ProSiteProfiles Myb-like domain profile. 30 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00695 Cca-Chr6 19058164 19065078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00695 68 454 MYB Transcription Factor Family AT1G14350 57.908 7.72e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00695 Myb_DNA-bind_6 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00695 K09422 - gmx:100807667 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00695 06 19058164 19065078 Cca06g00695 06 19058164 19065078 ECH
Cca06g00695 06 19058164 19065078 Cca06g00661 06 18390423 18391501 PCT