Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00692 ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCCCTCACCTCAATGCTACCCACATGTACACCTCAAGAATATCATGGAGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCATGGAGAAGAAGCCAATGCTGAGGAAGACTTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGAAGGCTTAACTTGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGCTTGCAGCCAAGGCAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACAAAGCAGTTGGAGAAAGACTATGATCTCCTTAAAAGACAGTATGAAGCTGTCAAGTCAGATAACGATGCACTCAAATCTCAGAATCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTATCCACACATCAGCCAAGCAGACCTCTCTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACATTCAATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCTTGAGCAACATGTTCTGTGGCATGGATGATCAATCCGGCTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 840 0.444 MAFFPANFMLQTPHHDDHQPPPSLTSMLPTCTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNLEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALKSQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPDIQCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00692 279 MobiDBLite consensus disorder prediction 179 199 - -
Cca06g00692 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 279 - -
Cca06g00692 279 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Cca06g00692 279 CDD homeodomain 76 132 IPR001356 GO:0003677
Cca06g00692 279 Coils Coil 123 171 - -
Cca06g00692 279 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Cca06g00692 279 Gene3D - 68 137 - -
Cca06g00692 279 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g00692 279 SMART HOX_1 74 135 IPR001356 GO:0003677
Cca06g00692 279 SUPERFAMILY Homeodomain-like 67 133 IPR009057 -
Cca06g00692 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 279 IPR045224 GO:0003700
Cca06g00692 279 MobiDBLite consensus disorder prediction 54 82 - -
Cca06g00692 279 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Cca06g00692 279 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Cca06g00692 279 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Cca06g00692 279 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Cca06g00692 279 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00692 Cca-Chr6 19027540 19030220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00692 1 279 Homeobox Transcription Factor Family AT1G69780 63.729 2.43e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g00692 Homeodomain 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00692 K09338 - gmx:100814080 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00692 06 19027540 19030220 Cca06g00692 06 19027540 19030220 ECH