Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00690 ATGTCTTCCAGAAGATCTCGCTCAAGACAATCTTCTGCTTCCTCTCAGATCACAGATGCTCAAATCACTGATCTCGTTTCCAAGTTGCAACAACTCATCCCTGAGCTTCGCGCTAGGCGTTCCGACAAGGTTTCGGCTTCTAAGGTGTTGCAGGAGACATGCAACTACATAAAAAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGATTGTCGGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4539 MSSRRSRSRQSSASSQITDAQITDLVSKLQQLIPELRARRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00690 93 Coils Coil 57 77 - -
Cca06g00690 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Cca06g00690 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Cca06g00690 93 Gene3D - 18 89 IPR036638 GO:0046983
Cca06g00690 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Cca06g00690 93 CDD bHLH_AtPRE_like 17 77 - -
Cca06g00690 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Cca06g00690 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00690 Cca-Chr6 18983594 18984922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00690 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 7.75e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00690 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00690 - - gmx:100804830 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00690 06 18983594 18984922 Cca06g00690 06 18983594 18984922 ECH
Cca06g00690 06 18983594 18984922 Cca03g00555 03 9481936 9484357 ECH
Cca06g00690 06 18983594 18984922 Cca07g02144 07 49418343 49420402 ECH
Cca06g00690 06 18983594 18984922 Cca09g00214 09 4633977 4636752 ECH