Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00689 ATGCTTGACACCCCTTCCCTTGCGCCTAGCATTATCGTAGTTCGTGATGAACTACACAAAGTGTTGACTCTAATTTTAGGAGGCGAAAAGGTGTTAAATCTATCGTTGGTGGAAATGTGGATCCGAGGATTCAGTTCTTGGATTAAGGGTTGCACTTTGTTGGCCTTAATATCTGTAATTTCCGCTCTGGAACCTGAAGTGGGATCGACCCGCGTCGTCTTTCAGACGAAGTATGGGGATATTGAATTTGGCTTCTTTCCAACTGTTGCACCCAAAACTGTTGACCACATTTTTAAGCTTGTGCGACTTGGAGGCTATAACACTAACCATTTCTTTCGGGTGGATAAGGGATTTGTGGCCCAAGTAGCTGATGTTATGGGTGGAAGATCTGCTCCCATGAATGACGAACAAAAAAGAGAAGCTGAGAAGACTGTTGTTGGTGAATTTAGTGAAGTCAAGCATGTTCGGGGGATTCTTTCCATGGGAAGGTATGATGATCCAGACAGTGCTTCATCCTCATTTTCAATTCTACTTGGAGATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAAAGTTACTAAAGGTGATGAAACACTGACAAAGCTCGAGCAACTACCTACCCGTAAAGAGGGTATATTTGTAATGCCAATGGAACGCATCACTATCCTGTCATCATATTACTATGACACAGAGACAGAAAATTGTGAACAAGACAGATCTATTTTGAAGCGCAGACTAGCTGCCTCATCTGTTGAAGTTGAAAGACAGAGGATGAAATGCTTCCCCTGA 795 0.4277 MLDTPSLAPSIIVVRDELHKVLTLILGGEKVLNLSLVEMWIRGFSSWIKGCTLLALISVISALEPEVGSTRVVFQTKYGDIEFGFFPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVMGGRSAPMNDEQKREAEKTVVGEFSEVKHVRGILSMGRYDDPDSASSSFSILLGDAPHLDGKYAIFGKVTKGDETLTKLEQLPTRKEGIFVMPMERITILSSYYYDTETENCEQDRSILKRRLAASSVEVERQRMKCFP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00689 264 Gene3D - 60 236 IPR029000 -
Cca06g00689 264 SUPERFAMILY Cyclophilin-like 64 231 IPR029000 -
Cca06g00689 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Cca06g00689 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 123 IPR002130 GO:0000413|GO:0003755
Cca06g00689 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 157 172 IPR002130 GO:0000413|GO:0003755
Cca06g00689 264 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Cca06g00689 264 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 72 225 IPR002130 GO:0000413|GO:0003755
Cca06g00689 264 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 53 264 IPR044233 -
Cca06g00689 264 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 53 264 - -
Cca06g00689 264 CDD cyclophilin 73 226 - -
Cca06g00689 264 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 79 229 IPR002130 GO:0000413|GO:0003755
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00689 72 227 U-box Gene Family AT5G67530 29.878 1.66e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00689 - - gmx:100819238 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00689 06 18931319 18947367 Cca06g00689 06 18931319 18947367 ECH