Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00682 ATGGAATTGGAAGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACGGAACAACCTTGTTCCACCGCCACAAGAGATGGTGTTGTCACAGTTGCTGTtactactaccactactactactaataACAACCTCCACTTGGCGGAGGCGAAGAAAGCTCCgccaaagcggagttccacgaaggaccgtcacacgaaggttgatgggcgaggccgccggatccgcatgccggcggcctgcgcagccagagtgttccagctcacgcgtgagctgggacacaagtctgatggtgagaccatagaatggctcctccagcaggcggagccagcggtcatcgccgccaccggcaccggcaccatccccgccaacttcacctctctcaacatctccctccgcagctccggctccaccatgtcggcgccgtcacACTATTTCCGCGGGAATTACTTCAACCCTAGCACGTTCTCTACCTCTACTGCTGCTACTGCCGCCGCCGCCGCGGCGCAGCTGAGAAACCGAGCGGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACAGTTCTTCCATCTCCGCGATTTTGAATTTCAACCCTATGGGCAACGTGAATGTAATTCAACAAGCGAAGCAGGAGCTCCGGGAAGAATCCGGCGGCGGCGGCGGTCTTGAATCGGTGGCTTCGGATTCCGATGGAGGCTTAGGGAGAAAGAGAAGGCCGGAGCAAGAGCTGTCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAAGGCATGAATggtggtggcggcgtcggcggcggcaacaatggcggcgATAATCCCATTTGGGCAATTCCCTCTGTTGGGAATAGTGGCGTGTATAGAGGAGCTATGTCTGCTCCGGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGTCCCTTATGCCAGGTGGTCAACTAGGTTCCGGCATGGTtggcggcggcggaggcggtggcggtggcggtggtggtggTGGTCAACTTCTAAGTGAAAGCAACTTAGGCATGCTTGCTGCCCTCAATGCCTATAGGCAAATTCCGGCGAACGGCGTCTCGGAGTCTCCGGCCAGCGCCGGGCAACCTCACGGCGGAGATGACGGACGTGACTCCACCAGTCAACATTCATGA 1281 0.381 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTATRDGVVTVAVTTTTTTTNNNLHLAEAKKAPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAATAAAAAAQLRNRAEWDRNMSMVMEDSRRSMLENSSSISAILNFNPMGNVNVIQQAKQELREESGGGGGLESVASDSDGGLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQGMNGGGGVGGGNNGGDNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMSLMPGGQLGSGMVGGGGGGGGGGGGGGQLLSESNLGMLAALNAYRQIPANGVSESPASAGQPHGGDDGRDSTSQHS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00682 426 MobiDBLite consensus disorder prediction 400 426 - -
Cca06g00682 426 MobiDBLite consensus disorder prediction 63 82 - -
Cca06g00682 426 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cca06g00682 426 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 4 426 - -
Cca06g00682 426 Pfam TCP family transcription factor 73 194 IPR017887 -
Cca06g00682 426 MobiDBLite consensus disorder prediction 64 82 - -
Cca06g00682 426 MobiDBLite consensus disorder prediction 232 265 - -
Cca06g00682 426 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 426 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00682 Cca-Chr6 18780283 18782451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00682 266 401 TCP Transcription Factor Family AT1G69690 36.301 5.67e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca06g00682 TCP 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00682 - - gmx:100781296 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00682 06 18780283 18782451 Cca06g00682 06 18780283 18782451 ECH