Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00681 atgaaCGTGGATCTCGAATCATTGGCTGAGGCCACTTCCGGAGCCATTGGATCATTGCTCAGCACCACTATTTTGTACCCTCTCGACACGTGCAAGACCAAGTACCAGGCTGAGGCTCGTTCCCATGGTCACAGAAGATATAGGAATCTCACTGATGTATTTTTGGAGGCAATATCTAACCGTCAGGTGCTTTCACTTTACCAGGGCCTTGGAACAAAGAATCTTCAAGCCTTCTTTTCCCAATTTGTCTACTTCTATGGATACAGCTATTTTAAAAGACTGTATCTACAAAAAAGTGGTTATAAATCTATTGGAACAAAAGCAAACTTGGTTATTGCTGCTGCTGCTGGGGCTTGCACTGCCATTGTGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGACTTTGGAAAGTCTAAAGGGCTGCTGAGTACTCTTACAGAAGGATCCTGGAGTGATGCATTTGATGGCCTCAGTATTTCCTTGCTGCTGACCTCAAACCCTGCAATACAGTATACAGTGTTTGATCAGCTGAAACATCGAACACTGAAGAATAAACAAAACGAAACTGATAAAGGAGCATCTCCAGCATCCCTTTCTGCATTTATGGCCTTTCTTTTAGGTGCAATTTCAAAGAGCATCGCTACCTGTGTAACATATCCAGCTATTAGGTGCAAAGTTATCATTCAAGCTTCAGACTCAGATGAAGCATCCTCCAAAACAAAGATAAAATCACAGAAAACTGTGTCTAGAGTTCTCTATGGAATATGGAAAAGAGAGGGCATACTGGGATTTTTTAAAGGACTGCATGCTCAAATCTTAAAAACTGTTTTGAGCTCAGCACTGCTCTTAATGATCAAGGAAAAAATCTCTGCTACTACTTGGGTGCTTATCCTTGCAGTTAAAAGgccaacgtggcCCACCGTTCGATCTAGACCATCCAACGGTCCAGATTTAACAACCGTTGGATTTTTAACCGCCAAGGCCAACGTGGCAGGCTACACCCACCTAGGTCTCGGCATAGGCTACACCCACCTAGGTCTTGGCATAGGCTACACCCACCTAGGTCTCGGCATAGACTTCATCGCAGATTTAATAACCGTTGGGCTCTCAACCGTCTCGGGATTATATGATACCTGCCACACTAACAGCCCCAACTCTTACTCTCGTCTCCTCCGCCACTGGACCCCACCACTGCTGACGACGCCGCCGCCAACGTCGCCGAAGAGCCTCCCAGAAGGAAGTTCCGTTACACCCctGGTGGTGGTGCTGTCCCCTGTTCTTTTAGTTGTGGCAAAAATGCCAGAAGATATTGTTTACCAACACCCTTTGTATGGTGGCAAAATATCTAGCACGTTCCCCAACAGGTTCCAGGATGTCAGCAACATTAGAGAAGTCCCTAATCATCAGGAGGTGTTCGTGGACCCGAGTCGAGATGAAAGCTTGATCTTCGAGCTTTTAGAATTAAAGCCTGATGTTGCTGATAATGGGAGTGCTGCATGGTTTCTTCAAGACCTTGCTAGAGAACAGGATGCTGAAGGAAGTGTGGTTATTGGGCAGTCAGGAGTTCTTGAAGCACCTGGTTTGATGTACAACAATTCTCCTGCTGTTGTAACAACTGCAGTGGGTCAAATGGCAATTTCTAAAGGACGGCAAGGAAGGGAAGCACAAAATATTGTGAAAGTTTATTTGGCAAATTTGCGTCTTAAAGGAGTCGAAACTGATGTATTAGTCACTGCATACGAGCCCATTGTTATAAATCCTTTGAGTGAAAGTGCGGACACAGTTGGCGCTGGTGTAGCTGTTCCAGCTCCACAAGCTGGATGTATGCCCATGGACGAGGTCTTTAAACTTGCTGTTACAAGCTTCAGGGTTCTTGACTGGGGTCTTTTTTGA 1905 0.4504 MNVDLESLAEATSGAIGSLLSTTILYPLDTCKTKYQAEARSHGHRRYRNLTDVFLEAISNRQVLSLYQGLGTKNLQAFFSQFVYFYGYSYFKRLYLQKSGYKSIGTKANLVIAAAAGACTAIVTQPLDTASSRMQTSDFGKSKGLLSTLTEGSWSDAFDGLSISLLLTSNPAIQYTVFDQLKHRTLKNKQNETDKGASPASLSAFMAFLLGAISKSIATCVTYPAIRCKVIIQASDSDEASSKTKIKSQKTVSRVLYGIWKREGILGFFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAVKRPTWPTVRSRPSNGPDLTTVGFLTAKANVAGYTHLGLGIGYTHLGLGIGYTHLGLGIDFIADLITVGLSTVSGLYDTCHTNSPNSYSRLLRHWTPPLLTTPPPTSPKSLPEGSSVTPLVVVLSPVLLVVAKMPEDIVYQHPLYGGKISSTFPNRFQDVSNIREVPNHQEVFVDPSRDESLIFELLELKPDVADNGSAAWFLQDLAREQDAEGSVVIGQSGVLEAPGLMYNNSPAVVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKGVETDVLVTAYEPIVINPLSESADTVGAGVAVPAPQAGCMPMDEVFKLAVTSFRVLDWGLF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00681 634 SUPERFAMILY Mog1p/PsbP-like 443 634 IPR016123 -
Cca06g00681 634 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Cca06g00681 634 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Cca06g00681 634 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 307 - -
Cca06g00681 634 Pfam Mitochondrial carrier protein 202 294 IPR018108 -
Cca06g00681 634 Pfam Mitochondrial carrier protein 104 188 IPR018108 -
Cca06g00681 634 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Cca06g00681 634 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 296 IPR018108 -
Cca06g00681 634 Pfam Ran-interacting Mog1 protein 446 586 IPR007681 -
Cca06g00681 634 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 442 634 - -
Cca06g00681 634 SUPERFAMILY Mitochondrial carrier 7 292 IPR023395 -
Cca06g00681 634 Gene3D Mitochondrial carrier domain 2 297 IPR023395 -
Cca06g00681 634 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 307 IPR045900 GO:0005347|GO:0006635|GO:0015217
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00681 Cca-Chr6 18731272 18753781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00681 23 315 Chloroplast and Mitochondria Gene Families AT1G25380 25.574 3.39e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00681 - - gmx:100787682 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00681 06 18731272 18753781 Cca06g00681 06 18731272 18753781 ECH