Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00666 ATGGCCAAATTACTTATTGAGGAAGATGTTCCCTTTAAATTCCCAGCAGGTCTTAGAGTCCTTGCGGTTGATAGTGACCCCGCTATTTCTACAATCATCAAGCAATTGTGTTTTCAATGCATTTATCATGTTATCACATGCTCTGATACCCTACTTGCTTTGAATCATGTACGAGAGAAAAAAGATTGCTTTGATATGATACTAATTGAAGTTCACATGCCAATCATGGATGGATATGAATTCATTCAACATGTGAGCAAGGAAATCAATGTTCCCATTATTATGATGTCTCTAGATGATGCTCCGAGTGCTGTAATGAAGGCTATTGAACATGGGGCTTGTGATTATTGGATTAAGCCTTTGCATGAGAATCAATTCAAAATTATGTGGAAGCATGTTGTCAAGAAATTATGGAGCGAAAATAAGCTACCCAAAAAGAATGATTCTGAATTTACTTCTTCTAATATTGATGCACTGGTGAGGTACCGAAAGAATAGCAGTTCCAATTCCAAGGAATCTGATGCTGATGAATCAGAGGATTGTTATACACTCCTAACAAAAAAGCCTCGTATAATGTGGTCATCAGAACTACATAATCAATTTGTCAAGGCGGTGATGCAAATTGGAGTTGATAAAGCAAAACCAAAGGAGATTCTTGAAGTGATGCAAATTCCTGATATGACAAGAGATCATATTGCTAGTCATTTGCAGGTTTGTTTTCTATATGCATTTGAAACTTAG 741 0.3644 MAKLLIEEDVPFKFPAGLRVLAVDSDPAISTIIKQLCFQCIYHVITCSDTLLALNHVREKKDCFDMILIEVHMPIMDGYEFIQHVSKEINVPIIMMSLDDAPSAVMKAIEHGACDYWIKPLHENQFKIMWKHVVKKLWSENKLPKKNDSEFTSSNIDALVRYRKNSSSNSKESDADESEDCYTLLTKKPRIMWSSELHNQFVKAVMQIGVDKAKPKEILEVMQIPDMTRDHIASHLQVCFLYAFET 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00666 246 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 13 237 - -
Cca06g00666 246 SMART REC_2 18 130 IPR001789 GO:0000160
Cca06g00666 246 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Cca06g00666 246 SUPERFAMILY CheY-like 17 146 IPR011006 -
Cca06g00666 246 CDD REC_typeB_ARR-like 20 134 - -
Cca06g00666 246 Gene3D - 185 243 - -
Cca06g00666 246 Gene3D - 18 152 - -
Cca06g00666 246 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 237 IPR045279 GO:0009736
Cca06g00666 246 SUPERFAMILY Homeodomain-like 186 242 IPR009057 -
Cca06g00666 246 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cca06g00666 246 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00666 Cca-Chr6 18469761 18471542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00666 14 225 Response Regulator Gene Family AT4G16110 40.517 1.30e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g00666 Response_reg 5.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00666 - K14491 gsj:114399361 276.944