Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00665 ATGGAGGAGAGAAATGATGCTGAGAAACTTGATGAAGTCATACTACCGGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTCAAGAGAAAGATTCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCCACCACAGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACTGGCACTGATAGGCCTATATACTCCTCAGAAGGTTCCAAGTGTATTGGCCTTAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCGGCCAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCCTCTCTCACTGACTCACTGTCCCCAAAGTACATAGACAAAACCATTCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATTCCACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATATCCTAACTAAAGATCAAGACAGCACCCAGTTTTGTTCACCCAACATGCCATTGCCAAAGAAAACTAGCTTAACAAGCCAGTTCTGTACTAACAATTACAATGATGCACAACCTTTAACCACTAATAGTTGTAGTAGTAGTACTCTTTGTCCTTTAGATGTTGCCTCATATAAATCCATTATCAACCCATTGCTCTACAAAGCCTTTGACCATTTTCCCATTTCAAATGGAGACCTTAGCACCAACTTGCTATTCTCATCTCCTTTTGAAACATCAGATCCTAACGCCAAATCTACAATGGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCGTGCTAGGAGATCTAAACAAGACTTCGGAGGATACAAACACAAGCACAAACTTTGGTGAGTTGCAAGAGCACTGTAGTGGCTACCCAATACCATTCTTACGTGAGATGCAAACCACATTTGGTAACCAACAATATTATGATAATGTTAATGCATTGGTAAAAGTTCCTAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGTTGGAGAGTGTACGATCCATTGGGTTCCCATTCAGTAGTATGCCTTTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATGTGCCATCTAGTTATTCCACAACCAAGTGCTATACTTAG 1419 0.3813 MEERNDAEKLDEVILPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKTIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPANESWAICRIFKKTNSTAQRALSHSWVSSLPETRTSDILTKDQDSTQFCSPNMPLPKKTSLTSQFCTNNYNDAQPLTTNSCSSSTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTNLLFSSPFETSDPNAKSTMDVSSMLLNMSSSVLGDLNKTSEDTNTSTNFGELQEHCSGYPIPFLREMQTTFGNQQYYDNVNALVKVPNVNVPRVDDQELELESVRSIGFPFSSMPFNIGDAWKSNLLWDTSSFPCDVPSSYSTTKCYT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00665 472 PANTHER PROTEIN FEZ ISOFORM X1 1 470 - -
Cca06g00665 472 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 470 - -
Cca06g00665 472 SUPERFAMILY NAC domain 13 144 IPR036093 GO:0003677|GO:0006355
Cca06g00665 472 Gene3D NAC domain 23 224 IPR036093 GO:0003677|GO:0006355
Cca06g00665 472 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Cca06g00665 472 ProSiteProfiles NAC domain profile. 14 219 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00665 Cca-Chr6 18449297 18451097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00665 2 233 NAC Transcription Factor Family AT5G39820 58.475 2.49e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca06g00665 NAM 9.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00665 - - gmx:100170721 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00665 06 18449297 18451097 Cca06g00665 06 18449297 18451097 ECH