Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00664 ATGGctaattcaacatcctcgtcctttgcctatgaatggtcttatgatgttttcctcaattttcggggtgaggatacccgctatggttttactggacacctttttcatgctctgtgtcaaaagggagtcaagactttcatggatgatcaagatttgaggaagggagaaggaatctcagctctaatggaggcaattcaagaatctagaactgccattgtaatattttcaaaggactatgcatcatcacagtcttgtttagaagaacttgtcatgatcatggaatgcttaaatcataagggcaggctggtttggcccgttttttataaagtggatccatgtgacgtgcgacatcagaaagaaagttatgcagaagcactagccaagcaagaaaccagaatcagtgacaaagacaaggtaaacaaatggaggtcagttttgcaagcagcagctaatctatacggttggcatttcggtgaacgcaggtacgaatatgaattcattggagagatcgttcaagaggtctctaaatggatcaaccgtagcactttacatgttgctcatcacccagttgggttagagtctcgcgtgcaaaaggtgaagtcacttctagatgttgagtcaaatgatggggtcaacatggtgggaatttatggaataggtggaattggaaagacaacacttgcatgtgacgtatacaatttcattgctcatcaatttgaaggtcactctattattgctgacattagagaaaattcaatgaaaaaagacctggtacaacttcaggagacccttctttgtgatgtagttggggagaaagacattaagttggggaatgtaaagaaagggattccaataattaaaagtaggctctgtaaaaagaaagttcttttaattttggatgatgttgacaaattggagcaattagaagcacttgcaggtggacctgattggtttggtccaggcagcagaattattatcacaactagagatatgcatttgctacattttcatgatgttaaaagaacttataaagttgaaggattaaatgatgtagaagcccttgaattgttcagcagggatgctttcaaaagaaagcatgttgatcctgattatttggaaatttccaagagagtattgcaacattctaatggcctaccgttagctctgaaaataataggctctgatttatatggtaagacagatttggaatggaagtcagcattagatacttatgaaagaattcctcatgatgatattcaacaaatcctaagagtaagctatgatggcttaaaggaatttgaaaaggaaatatttttagacattgcttgcttctttaaaggatacacactaagttatgtcaaggacatgctacatagtggtcgtagttctgcccctgacaatgctatccgggtgttaattgataaatgtctaatagaaattgacaaactatgtgacaaactatgtgtgagaatgcatgatttgattgaggatatgggtagagaaattgtacggcttgaatcaccctcagaaccaggtgaacgcagtagattatggtcctctgaagatattcttcatgttttcgaacagaacaagGGATCCAATAAAACTGAGATTATCATGCTACGCTTGTCTAAAGATGAAGAAGTGCAATGGAATCCATCTGCATTGGAGAAGATGGAAAACCTTAAAGTACTGGTGGTAGAAAATGCTCACTTTTTTGGGGACCTAGTGCTTCCCCAAAAAAGTTTAAGAGTGCTAAAATGGTATGGATATCCTGAATCATCACTGCCTGCTGATTTTGATCCAAAGAAACTTGTCATATTGGACTTGCCTATGAGTTCCTCCTTTACATTCAACAATCAACTGAACATGAAATTTAAGTCCTTGACAGAAATGAATTTAAGCGGTTGTGAATTACTTAAAGAAATACCTAACATGTCTGAAGCACCAAATTTAAAGAAATTGCTTCTTGATAATTGCAAAAATTTAGTTGAAGTTCATGATTCTGTTGGATTCCTTGGTAAACTCGAATATTTGATAATGGATCATTGCACCAATCTTAAGCTTCTTCCTCGTGAAATGAACTTAACTTCTCTTAAAAACATGGGGCTTTGGAATTGCCAGAGTCTCATGAGTTTTCCTGAAATTTTAGGGAAGATGGAAAACGTAAGTGAACTTGATTTGAGTGGTAGTGCCATAAGTGGATTGCATTTTTCAATTGGAAATCTAGTTGGGCTCACATTCGTGGCTCTCAATGGATGCCAACGGCTACTCGAACTACCGAGGAGTATTTTTATGCTGCCAAAACTCTGGACATTTGAAGCTGACAATTGTGAGCGGCTTGCACAAGTACAAAATGAGGAAGGTCAAGATCAAGAAACAATGTCTTCACATGTCAAGAAAGCTAGTTTTCATCGTTGTTATCATCTCACAGATAAATTTCTTTCAACACTTCTTCCTTGCTTGCGCATAGTGACGGATTTATCCCTTAATTACAGCAATATCACAATCCTTCCATCATGCATCAGTGTGTGTCTCTCCTTGACAAAACTTTCATTGAATGAATGCAAGGAGCTTCGAGAAATCAGAGGCCTCCCACCAAACATAATGTATCTTTCAGCTATGAACTGTACATCCTTGACTTCCGAATCTAAGGAAATGTTACTGAATCAGACACTACACGAGAATGGGGGAAAACATTTCATATTTACAGGATCAGCAATCCCAAGTTGGTTGAATTGCAGTAGCAAGGGTCCATCCCTGCGTTTCTGGTTTCGTAACAAGTTTCCCGAAATTACTCTATGTGCTGCTGGACTTTTTCGTTCGTTCGATCACCGTGTGTGGCACCTGATGGTCAATGACATACTACAGTTCTCGGTATATTGTTGTGTTATAGATCATTCATTTCAGGTTGAGACAAATCATACTTTTGTGTATGATCCTCTTGAAATAAGGGTTATCACAAATGAAGAATTACATATTAAGAATGGGTGGAACAGTGCTGAGATTTTGTTTGACTATCATGAATGGATGGGAGTACATGTACCGGAACAAAAATCAAACATGGCAGATATTCAATTTTCAAATCCCTACTCTTCAATGTCAAAGTAA 3111 0.1864 MANSTSSSFAYEWSYDVFLNFRGEDTRYGFTGHLFHALCQKGVKTFMDDQDLRKGEGISALMEAIQESRTAIVIFSKDYASSQSCLEELVMIMECLNHKGRLVWPVFYKVDPCDVRHQKESYAEALAKQETRISDKDKVNKWRSVLQAAANLYGWHFGERRYEYEFIGEIVQEVSKWINRSTLHVAHHPVGLESRVQKVKSLLDVESNDGVNMVGIYGIGGIGKTTLACDVYNFIAHQFEGHSIIADIRENSMKKDLVQLQETLLCDVVGEKDIKLGNVKKGIPIIKSRLCKKKVLLILDDVDKLEQLEALAGGPDWFGPGSRIIITTRDMHLLHFHDVKRTYKVEGLNDVEALELFSRDAFKRKHVDPDYLEISKRVLQHSNGLPLALKIIGSDLYGKTDLEWKSALDTYERIPHDDIQQILRVSYDGLKEFEKEIFLDIACFFKGYTLSYVKDMLHSGRSSAPDNAIRVLIDKCLIEIDKLCDKLCVRMHDLIEDMGREIVRLESPSEPGERSRLWSSEDILHVFEQNKGSNKTEIIMLRLSKDEEVQWNPSALEKMENLKVLVVENAHFFGDLVLPQKSLRVLKWYGYPESSLPADFDPKKLVILDLPMSSSFTFNNQLNMKFKSLTEMNLSGCELLKEIPNMSEAPNLKKLLLDNCKNLVEVHDSVGFLGKLEYLIMDHCTNLKLLPREMNLTSLKNMGLWNCQSLMSFPEILGKMENVSELDLSGSAISGLHFSIGNLVGLTFVALNGCQRLLELPRSIFMLPKLWTFEADNCERLAQVQNEEGQDQETMSSHVKKASFHRCYHLTDKFLSTLLPCLRIVTDLSLNYSNITILPSCISVCLSLTKLSLNECKELREIRGLPPNIMYLSAMNCTSLTSESKEMLLNQTLHENGGKHFIFTGSAIPSWLNCSSKGPSLRFWFRNKFPEITLCAAGLFRSFDHRVWHLMVNDILQFSVYCCVIDHSFQVETNHTFVYDPLEIRVITNEELHIKNGWNSAEILFDYHEWMGVHVPEQKSNMADIQFSNPYSSMSK 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00664 1036 Gene3D - 347 431 IPR042197 -
Cca06g00664 1036 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Cca06g00664 1036 PRINTS Disease resistance protein signature 213 228 - -
Cca06g00664 1036 PRINTS Disease resistance protein signature 289 303 - -
Cca06g00664 1036 PRINTS Disease resistance protein signature 382 396 - -
Cca06g00664 1036 PRINTS Disease resistance protein signature 694 710 - -
Cca06g00664 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Cca06g00664 1036 Gene3D - 9 176 IPR035897 -
Cca06g00664 1036 Pfam TIR domain 15 182 IPR000157 GO:0007165
Cca06g00664 1036 SUPERFAMILY "Winged helix" DNA-binding domain 417 527 IPR036390 -
Cca06g00664 1036 Gene3D Ribonuclease Inhibitor 695 896 IPR032675 -
Cca06g00664 1036 Gene3D Ribonuclease Inhibitor 533 694 IPR032675 -
Cca06g00664 1036 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 1005 IPR044974 GO:0006952
Cca06g00664 1036 SMART till_3 14 152 IPR000157 GO:0007165
Cca06g00664 1036 PANTHER ARCHAEAL ATPASE 25 1005 - -
Cca06g00664 1036 ProSiteProfiles TIR domain profile. 13 178 IPR000157 GO:0007165
Cca06g00664 1036 SUPERFAMILY L domain-like 534 888 - -
Cca06g00664 1036 Gene3D - 177 342 IPR027417 -
Cca06g00664 1036 Pfam NB-ARC domain 193 428 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00664 Cca-Chr6 18433580 18437832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00664 9 851 WRKY Transcription Factor Family AT4G12020 30.520 7.74e-88 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00664 - - ccaj:109800328 1444.48