Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00660 ATGGCTAATCCAACATCCTCTTCCTTTGCCTATCAATGGACTTATGATGTTTTCCTCAGTTTTCGGGGTGAGGACACCCGCACCGGTTTTATTGGAAACCTTTTTAATGCCTTGCGTCAAAAGGGAATCCACACCTTCATGGATGATCAAGAGCTGAGGAAGGGAGAAGAAATAACACCATCTCTGTCGAATGCAATTCAAGAATCTAGGATAGCCATCGTGATTTTTTCAGAAAACTATGCATCATCAACTTTTTGTTTACAAGAACTTGTCCAGATCATGGAGTGCTTGAATCACAAGGGCAAGCTGGTTTGGCCTGTTTTTTATAAAGTGGATCCATCTGATGTGCGTCATCAGAAAGGAAGTTATGCAGAAGCTCTAGCCAAGCATGAAACAAGAATCAGTGACAAGGACAAACTGAAAGCTTGGAGGTCAGTTTTCGAAGCAGCAGCTAATCTATCCGGTTGGCATTTCAAAGAGGGGTACGAATATGAATTCATTGAAAAGATCATTCAAGAGGTCTCTAAAAGGATCAATCGTAGCCCTTTATATATTGCTAATTACCCAGTGGGAATAGAGTCTCGCGTGCAGAAGGTAAAGTCACTTCTAGATGTTAAATCAAATAATGCAGTCCACATGGTAGGGATTTATGGCATAGGTGGAATTGGAAAAACGACACTTGCATGTGCAGTTTACAATTTCATTGCTGATCAATTTGAAGACCTTTGTTTTCTCGCCAACATTAGTAAAAAATCAGTGGAGCATGATCTGGTACATCTTCAGGAGACACTTCTGTGTGATTTAGTTGGAGAGAAACACATTAATTTGGGGAACGTTCGAAAAGGAATTCCAATAATTAAAAGTAGGCTCTGTAAAAAGAAAATTCTTTTGATTTTGGATGATGTTGACAAATTGATGCAATTAGAAGTACTTGCAGGTGGACTTGATTGGTTTGGTTCTGGTAGCAGAATTATTATCACAACCAGAAATAGACATCTACTACATTCTCACGGTGTTAAAAGAACCTATGAAGTAGAAGGATTAAATCATGAAGAAGCCCTTGAATTGTTTAGCTGGAATGCTTTCAGAAGCAAACAGGTCAATCCTGGTTATTTGTACATTTCAAAGAGAGTAATACAACATTCTAATGGCCTACCGTTATCTCTGGAAATAATAGGCTCAGATTTATATGGTAAAACAGAGTTGGAATGGAAGTCAGCATTAGATACTTATGAAAGAATTCCTCATGAAGATATTCAGAAAATTCTAAAAGTAAGCTATGATGGCTTAAAGGAATTTGAAAAAGAAATATTTTTAGACATTGCTTGCTTCTTTAAAGGATACACAGTAAGTTATGTCATAAACATGCTATATAGTGGTCGTGGCTATGTCCCAGATTATGCTATCCAAGTGTTGATTGATAAATGTCTAATAAAGATTGATCAATGTTATGTGAAAATGCATGATTTGATTGAAGATATGGGTAGAGAAATTGTACGGCTTGAATCACCCTCAAAACCAGGTGAACGCAGTAGATTATGGCTCTCTAAAGAAATTCTTCGTGTTTTCAAAGAGAACAAGGTATGTGCATTGTCAACTGCTTATTTGTGTCTTTGGTCCTTCCTTTTTTCATTTTTGACAAATTCATAA 1650 0.3709 MANPTSSSFAYQWTYDVFLSFRGEDTRTGFIGNLFNALRQKGIHTFMDDQELRKGEEITPSLSNAIQESRIAIVIFSENYASSTFCLQELVQIMECLNHKGKLVWPVFYKVDPSDVRHQKGSYAEALAKHETRISDKDKLKAWRSVFEAAANLSGWHFKEGYEYEFIEKIIQEVSKRINRSPLYIANYPVGIESRVQKVKSLLDVKSNNAVHMVGIYGIGGIGKTTLACAVYNFIADQFEDLCFLANISKKSVEHDLVHLQETLLCDLVGEKHINLGNVRKGIPIIKSRLCKKKILLILDDVDKLMQLEVLAGGLDWFGSGSRIIITTRNRHLLHSHGVKRTYEVEGLNHEEALELFSWNAFRSKQVNPGYLYISKRVIQHSNGLPLSLEIIGSDLYGKTELEWKSALDTYERIPHEDIQKILKVSYDGLKEFEKEIFLDIACFFKGYTVSYVINMLYSGRGYVPDYAIQVLIDKCLIKIDQCYVKMHDLIEDMGREIVRLESPSKPGERSRLWLSKEILRVFKENKVCALSTAYLCLWSFLFSFLTNS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00660 549 ProSiteProfiles TIR domain profile. 13 178 IPR000157 GO:0007165
Cca06g00660 549 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 530 - -
Cca06g00660 549 Pfam NB-ARC domain 193 430 IPR002182 GO:0043531
Cca06g00660 549 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Cca06g00660 549 PRINTS Disease resistance protein signature 213 228 - -
Cca06g00660 549 PRINTS Disease resistance protein signature 289 303 - -
Cca06g00660 549 PRINTS Disease resistance protein signature 382 396 - -
Cca06g00660 549 Pfam TIR domain 15 180 IPR000157 GO:0007165
Cca06g00660 549 Gene3D - 347 431 IPR042197 -
Cca06g00660 549 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 530 IPR044974 GO:0006952
Cca06g00660 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 441 IPR027417 -
Cca06g00660 549 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Cca06g00660 549 SMART till_3 14 153 IPR000157 GO:0007165
Cca06g00660 549 Gene3D - 176 341 IPR027417 -
Cca06g00660 549 Gene3D - 11 175 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00660 Cca-Chr6 18379098 18382740 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00660 190 514 WRKY Transcription Factor Family AT5G45050 37.920 5.44e-58 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00660 - - ccaj:109800328 838.565