Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00659 ATGGAGAACACATTGATACTTCCTTCACCTCATCTAGCTCCCTATATTCCAAGCcagctaatctatccggttggcatttcaaagaggggtacgaatatgaattcattgaaaagatcattcaagagtagattatggctctctaaagaaattcttcgtgttttcaaagagaacaagGGGTCCGATAAAACTGAAATCATCATGTTACACTTGGTCAAAGATAAAGAAGTGCAATGGAATGTATCTGCATTAGAGAAGATGGAAAATCTTAAAATATTGGTGGTAGAAAATGCTCGCTTTTCTAGGGGACCAAGTGCTCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGCATATCCTGAATCATCACTGCCTGCTGATTTTGATCCAAAGAAACTTGTCATATTGGACTTGCCTACGAGTTCCTTTACATTCAACAATCAACTAAACATGAAATTTAAGTCTTTGATGGAACTGAATTTAAGCGGTTGCAAATTACTAAAAGAAATACCTGACATGTCTGGAACACCAAATTTGAAGAAATTGTATCTTGATCATTGCAGAAATTTAGTTCAAGAGCTACGAGAAATCAGAGGCCTTCCACCAAACATAAAAAATCTTGAAGCTATCAATTGCGCATCTTTAACTTGTGAGTCTAAGGAAGTGTTACTGAATCGGATACTACACGAGAACGGGGGCAAACATTTCATATTTCCAGGATCAAgtgaacgcagtagattatggctctctaaagaaattcttcgtgttttcaaagagaacaagGGGTCCGATAAAACTGAAATCATCATGTTACACTTGGTCAAAGATAAAGAAGTGCAATGGAATGTATCTGCATTAGAGAAGATGGAAAATCTTAAAATATTGGTGGTAGAAAATGCTCGCTTTTCTAGGGGACCAAGTGCTCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGCATATCCTGAATCATCACTGCCTGCTGATTTTGATCCAAAGAAACTTGTCATATTGGACTTGCCTACGAGTTCCTTTACATTCAACAATCAACTAAACATGAAATTTAAGTCTTTGATGGAACTGAATTTAAGCGGTTGCAAATTACTAAAAGAAATACCTGACATGTCTGGAACACCAAATTTGAAGAAATTGTATCTTGATCATTGCAGAAATTTAGTTCAAGTACATGATTCTGTTGGATTTCTTGATAAACTTGAATTTTTGACAATGGATAATTGCACCAGTCTTAAGATTCTTCCCCGTAAAATCCTACGAAATCCTAAACCAATACACCCCCCTAAGCATGGGTAG 1308 0.3165 MENTLILPSPHLAPYIPSQLIYPVGISKRGTNMNSLKRSFKSRLWLSKEILRVFKENKGSDKTEIIMLHLVKDKEVQWNVSALEKMENLKILVVENARFSRGPSALPKSLRVLKWCAYPESSLPADFDPKKLVILDLPTSSFTFNNQLNMKFKSLMELNLSGCKLLKEIPDMSGTPNLKKLYLDHCRNLVQELREIRGLPPNIKNLEAINCASLTCESKEVLLNRILHENGGKHFIFPGSSERSRLWLSKEILRVFKENKGSDKTEIIMLHLVKDKEVQWNVSALEKMENLKILVVENARFSRGPSALPKSLRVLKWCAYPESSLPADFDPKKLVILDLPTSSFTFNNQLNMKFKSLMELNLSGCKLLKEIPDMSGTPNLKKLYLDHCRNLVQVHDSVGFLDKLEFLTMDNCTSLKILPRKILRNPKPIHPPKHG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00659 435 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 238 425 IPR044974 GO:0006952
Cca06g00659 435 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 211 IPR044974 GO:0006952
Cca06g00659 435 SUPERFAMILY L domain-like 265 424 - -
Cca06g00659 435 SUPERFAMILY L domain-like 63 215 - -
Cca06g00659 435 Gene3D Ribonuclease Inhibitor 271 427 IPR032675 -
Cca06g00659 435 Gene3D Ribonuclease Inhibitor 67 226 IPR032675 -
Cca06g00659 435 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 41 211 - -
Cca06g00659 435 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 238 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00659 Cca-Chr6 18370252 18378200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00659 238 422 WRKY Transcription Factor Family AT4G12020 32.836 3.74e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00659 - - ccaj:109800327 358.992