Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00658 ATGGTGCAGCGTCTCACCTATCGCAAGCGGCATAGCTATGCCACGAAGTCCAACCAGCACAGAGTCGTCAAGACCCCTGGTGGTAAGCTCGTTTATCAGACCACCAAGAAGAGGGCTAGCGGACCCAAGTGCCCCGTCACTGGAAAGAGGATTCAGGGTATTCCACACTTGAGGCCTGCAGAATATAAGAGGTCAAGGTTACCTAGAAACCGGAGGACTGTGAATCGTGCATACGGTGGAGTTTTGTCTGGAAGTGCTGTCAGAGAAAGGATTATTAGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAAGCTAAGGAAAAGCAGACATTGAAGGCTTGA 363 0.4848 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQTLKA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00658 120 Gene3D - 39 120 - -
Cca06g00658 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 Gene3D - 1 37 - -
Cca06g00658 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 119 IPR008195 GO:0003735|GO:0005840|GO:0006412
Cca06g00658 120 PANTHER - 1 119 - -
Cca06g00658 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00658 Cca-Chr6 18366364 18368356 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00658 1 115 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 93.913 8.61e-76 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00658 K02915 - gmx:100306077 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00658 06 18366364 18368356 Cca06g00658 06 18366364 18368356 ECH